Arachis hypogaea (peanut): 112790754
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Entry
112790754 CDS
T07294
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ahf
Arachis hypogaea (peanut)
Pathway
ahf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112790754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahf03019
]
112790754
03041 Spliceosome [BR:
ahf03041
]
112790754
03009 Ribosome biogenesis [BR:
ahf03009
]
112790754
03016 Transfer RNA biogenesis [BR:
ahf03016
]
112790754
Enzymes [BR:
ahf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112790754
Messenger RNA biogenesis [BR:
ahf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
112790754
Spliceosome [BR:
ahf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112790754
Complex C
U4/U6.U5 tri-SnRNP related factors
112790754
Ribosome biogenesis [BR:
ahf03009
]
Eukaryotic type
Pre-60S particles
Helicases
112790754
Transfer RNA biogenesis [BR:
ahf03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
112790754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
ATPase_2
DUF7579
Motif
Other DBs
NCBI-GeneID:
112790754
NCBI-ProteinID:
XP_025689078
LinkDB
All DBs
Position
3:complement(67656290..67663755)
Genome browser
AA seq
991 aa
AA seq
DB search
MEELKESPTLGKRKEPEYDSQSERTTEIPTQTKTPEPQKPTPKKPRSSARTCVHEVAVPS
GYNSTKDESLHGTLSNPVYNGPMAKTYPFTLDPFQSVSVACLERNESVLVSAHTSAGKTA
VAEYAIAMSFRDKQRVIYTSPLKALSNQKYRELYQEFKDVGLMTGDVTLSPNATCLVMTT
EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNA
TEFAEWICNIHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDENEQFREENFLKLQDT
FSKQKVVDRGRGAKSNGKHGKGGSGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMS
MSKLDFNTQEEKDTVEDVFRSAVLCLNEDDRSLPAIELMLPLLQRGIAVHHSGLLPVIKE
LVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAG
RRGKDERGICIIMIDEQMEMNNLKEMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEH
VIKNSFHQFQYEKALPGIGKRVSKLEEEVALLDASGEAEVSEYHKLKLEIAQLEKKMMAQ
IIRPEMILYFLVPGRLIRVREGGTDWGWGVVVNVVKKPAGGGYIVDTLLHCSPSSNENSS
RPKPCPPRPGEKGEMHVVPVQLPLIAALSKLRVSIPPDLRPLEARQSILLAVQELGNRFP
QGLPKLNPVKDMDIRDSVIVELVTQIEELEKKLFSHPMHKHQDVDQIKCFQRKAEVNHEI
QQLKTKMRDSQLQKFREELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELM
FNGTFNDLDHHQVAALASCFIPGDKSTEQIQLRTELARPLQQLQDSARRIAEIQHECKLD
INVNEYVESTVRPYLMDVIYSWSKGANFADVIQMTDVFEGSIIRSARRLDEFLNQLRAAA
NAVGEVDLEKKFTAAGESLRRGIMFANSLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggaggaactgaaggaatctccaacactgggaaaacggaaggaacctgaatacgattca
caatcagaacgcaccaccgaaatcccaacccaaaccaaaacaccagaaccccagaaacca
actccgaagaagcctcgaagctcagcacgaacctgcgtccacgaagtcgctgttcccagc
ggttacaactccaccaaggacgaatccctccatggcacactctccaaccctgtctataat
ggtcccatggccaaaacctaccctttcaccctcgaccccttccagagtgtctctgttgcg
tgcctcgagcgcaatgagtcagtgcttgtctccgcccacacctcagctggaaaaaccgcc
gtcgccgaatacgccattgcaatgtcgttcagggacaagcagagagtcatctacacttcg
cccctgaaggctctcagcaaccagaagtaccgggagctctatcaggagttcaaagatgtt
ggccttatgaccggtgatgttaccctttcgcctaacgccacttgccttgttatgactact
gagattcttaggggtatgctttacaggggctctgaggttttgaaggaagttgcttgggtt
atctttgatgagattcattatatgaaggatcgtgagaggggtgttgtttgggaagagagt
ataatctttttgccgcccgctattaagatggtttttttgtctgcaactatgtcgaatgca
accgagtttgcagagtggatttgtaatattcacaagcagccttgccatgttgtgtacact
gactttaggcctactcctttgcagcactatgttttccccgtggggggcagtggattgtat
ttggttgttgatgaaaatgagcagttcagggaggagaatttcttgaagctgcaggatact
ttttcaaagcagaaagtggtcgacagaggcaggggtgctaaatccaatggcaaacatgga
aaaggaggttctggcgggtcagacatatacaagattgtcaagatgataatggaacggaaa
ttccaacctgttatcatatttagcttcagcagaagagagtgtgaacagcatgcaatgtcg
atgtctaagcttgacttcaatacccaagaggagaaggacacagtggaagatgtttttcgc
agtgcagtgctctgtttgaatgaagatgacaggagcttaccggcaattgagttgatgttg
ccactccttcagcgagggattgctgtccatcattctggccttcttcctgtcatcaaagaa
ttggttgagcttctcttccaggaaggccttgtaaaggccctctttgctactgagacattt
gcaatgggtttgaatatgccagcaaaaactgttgtgttcactgccgttaaaaagtgggat
ggtgatagtcaccgatatattggatccggtgaatatatacagatgagtggaagagctggg
cgtcgtggcaaggatgagcgcggaatttgtatcataatgattgatgagcaaatggaaatg
aataacctcaaggaaatggttttgggtaaacctgcgcctttagttagtactttcaggtta
agctactactcaattttaaatttgatgagccgtgctgaaggccagttcaccgcggaacac
gtgataaaaaattcatttcatcaatttcaatatgaaaaggccttacctggtatagggaaa
agggtgtcaaagctagaggaagaagtagctttgcttgatgcttcaggggaggctgaagta
tctgaatatcataagctgaaactggaaattgcacagcttgaaaagaagatgatggcacaa
ataataagacctgaaatgattctttattttcttgtccctggtcgattgatcagagtgaga
gaaggtggaactgattggggctggggtgttgttgtcaatgttgttaagaaacctgctggt
ggtggttatatagttgatactttgcttcattgttcacctagttcaaatgaaaatagctca
cggccaaagccatgtccgcctcgccctggagagaaaggtgaaatgcatgtggtccctgtt
caattaccattaattgctgctcttagtaaattgagggtctccatacctcctgaccttcgg
cccttggaagcaaggcagagcatattgcttgctgtacaggagctgggcaaccgttttcct
caaggtcttccaaagcttaaccctgtgaaggacatggacatacgtgattctgtgatagtt
gagcttgtaactcaaatcgaggaacttgagaaaaaattattttctcatcctatgcataag
caccaagatgtggatcaaattaagtgctttcagaggaaagcagaagtaaatcatgaaatt
cagcaactgaagacgaaaatgcgtgattctcagctacaaaaatttcgtgaagaattaaag
aatcgctcacgggtcttgaagaagcttggtcacattgatgctgatggtgtagttcagttg
aagggacgggcagcctgcttgattgacacgggcgatgaactccttgtcactgaattaatg
tttaatggtacctttaatgatcttgaccatcatcaagttgctgcccttgcaagttgtttt
ataccaggagataaatcaactgagcagatacaactgagaactgagcttgctagacctctt
caacagcttcaagatagtgcaagaaggatagcagagatacaacatgaatgcaaattggat
ataaatgtgaatgagtacgtagagtcaacagtgaggccatacttgatggatgtaatatac
tcttggtcaaagggtgcaaattttgcggatgttatacaaatgactgacgtctttgaggga
agtatcatcaggagtgctagaaggcttgatgagtttttgaatcagttgcgtgctgctgct
aatgcagttggggaggtcgatttggagaagaaatttacagcagcaggtgaaagccttcga
cgaggaattatgtttgcaaattctctgtacctatga
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