Arachis hypogaea (peanut): 112796150
Help
Entry
112796150 CDS
T07294
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ahf
Arachis hypogaea (peanut)
Pathway
ahf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ahf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112796150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahf03021
]
112796150
03019 Messenger RNA biogenesis [BR:
ahf03019
]
112796150
Transcription machinery [BR:
ahf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112796150
Messenger RNA biogenesis [BR:
ahf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112796150
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
CR_prot_dom_plant
Torus
Motif
Other DBs
NCBI-GeneID:
112796150
NCBI-ProteinID:
XP_025694260
LinkDB
All DBs
Position
4:8598052..8605539
Genome browser
AA seq
696 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDAAPPAAAAVSAPSAGLLSNQNDSTAAAAAAAVPNGAAAAAPTA
GDPGAAGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQ
DCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSAGPPPSVDEVLQKIQHLYSYNYNAS
NKFFQQRGSNYNQQAEKSQFPQGNNSTNQAVAGKPLQAESGNVQQQQVQQAQQPVNQSQV
QNVASGQPNQANKTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFD
SVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELS
FHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISIAAESKREEE
KAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHVVGPAVQGRGRGRGMMWPPHM
PLARGARPMPGMPGFNPVMMGDGLSYGPVGPDGFGMPDLFGVGPRGFPPYGPRFSGDFAG
PPAAMMFRGRPSQPGMFPGGGFGMMMNPARPPFKRGMGANPPRASRPVNMPPIFPPPPPP
PQNNNRLVKRDQRINDRNDKFGSGLEQGKNQDMMSQSGGPDEDMQGYKAQQDDQYAVNTF
RNDDSESEDEAPRRSRHGEGKKRRRSLEDANASSNH
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggaggattccgagggagtcctcagcttcgatttcgagggcggcctcgacgctgctccc
cccgctgccgccgccgtctccgcaccctccgccggacttctctccaatcaaaacgattca
accgcggcggccgctgcagccgcggttcccaatggcgctgccgcagctgcgcccactgct
ggagaccccggagctgccggaaatgtgcccgggaggcggagcttccggcagacggtgtgc
cggcactggctaaggagcttgtgtatgaagggagacgcgtgcgggttcttgcatcagtac
gacaaggcgaggatgccggtgtgccggttctttcggctgtacggtgagtgccgcgagcag
gattgcgtgtacaagcacaccaacgaagatatcaaggagtgtaacatgtacaagttagga
ttttgtcctaatggacctgattgccgatacagacatgctaaatctgctggacctccacct
tctgttgatgaggtccttcaaaagatccagcatttatattcttacaactacaatgcatcg
aacaagtttttccaacaaaggggttcaaactataatcaacaagctgaaaaatctcaattt
cctcaaggaaataattctacaaaccaagctgttgctggaaaaccattacaagcagagtcg
ggtaatgtccagcagcaacaagttcaacaggctcagcagccagtcaatcaaagccaagtg
caaaatgttgctagtggtcagcccaatcaggcgaataaaactgcaactcctttacctcaa
ggaatatctaggtattttattgttaaaagttgcaatcgtgaaaatttggagttatcagta
caacaaggagtatgggcaacacaaaggagcaacgagtctaaactaaacgaggcttttgat
tctgtggaaaatgttatactgattttctcagtcaaccgaactcgccatttccagggttgt
gcaaagatgacctccagaattggtggttctgttgctgggggaaactggaaatatgctcat
ggaactgcacattatgggcggaatttctctgttaaatggttgaagttatgtgaactgtca
ttccacaaaactcgccatttgaggaatccatacaatgaaaatttaccagtgaagataagt
agagattgtcaggagctggaaccctccatcggtgagcagttggcatccttgctttatctt
gagccagatagtgagcttatggctatctcaattgcagcagagtctaaacgagaagaagag
aaggcaaagggagtgaatccagacaatggaggagagaatccggatatcgtcccatttgaa
gacaacgaagaagaggaagaggaagaaagtgatgaagaggaggagagctttggtcatgtt
gttgggccagctgttcaaggcagaggtaggggcagaggcatgatgtggccgcctcacatg
cctcttgcacgcggagccagacctatgcctggaatgccaggttttaacccagtaatgatg
ggtgatggattatcatatgggcctgttggacctgatggcttcggtatgcccgatcttttt
ggtgtgggccctcgtggttttcctccatatggtcctaggttctctggtgattttgcagga
ccccctgcagccatgatgttccgtgggcgaccttcccaacctgggatgtttccaggtggt
ggatttgggatgatgatgaatcctgcacgtcctccctttaagagggggatgggcgcaaat
cctccaagagccagtaggccagttaatatgcctccgatttttccaccgccaccacctcca
cctcaaaataacaaccgacttgtaaagagggatcaaagaattaatgatcggaatgataaa
tttggttcaggattagagcagggcaagaatcaggatatgatgagtcaaagtggtggacct
gatgaagacatgcaaggatacaaagcacagcaggatgatcagtatgctgtcaacaccttc
aggaacgatgatagtgaaagcgaggatgaggcacctcggcggtcaaggcatggagagggg
aaaaagagaaggcgaagcttagaagatgctaatgcaagctctaatcactag
DBGET
integrated database retrieval system
