Actinoalloteichus hoggarensis: AHOG_11265
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Entry
AHOG_11265 CDS
T04975
Symbol
hrpB2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ahg
Actinoalloteichus hoggarensis
Brite
KEGG Orthology (KO) [BR:
ahg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahg03019
]
AHOG_11265 (hrpB2)
Enzymes [BR:
ahg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AHOG_11265 (hrpB2)
Messenger RNA biogenesis [BR:
ahg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AHOG_11265 (hrpB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_19
AAA_22
AAA_25
NACHT
nSTAND3
T2SSE
AAA_30
SLFN-g3_helicase
TsaE
AAA_16
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ASO19896
UniProt:
A0A221W294
LinkDB
All DBs
Position
complement(2564688..2568590)
Genome browser
AA seq
1300 aa
AA seq
DB search
MRTPPATSPLADLSARLPDLMLRDRHRLGRRLEGLRRGRDSRGAARDTALAAVAAEIDSA
ELRVARRRAAVPKIDYPAELPVGQRKDEILAAVRDHQVVILAGETGSGKTTQLPKICLEL
GRGVHGLIGHTQPRRLAARTVAERVAEELHTELGDAVGYAVRFTDRVGEDTLVKLMTDGI
LLAEIQRDRMLRQYDTIIIDEAHERSLNIDFLLGYLKDLLPRRPDLKVIITSATIDPERF
SRHFGGAPMIEVSGRTYPVEVRYRPVVTDEVERDQVQAICDAVDELAAEGPGDVLVFLSG
EREIRDTADALVKQELRNTEVVPLYARLSAREQHRVFQPHTGRRIVLATNVAETSLTVPG
IKYVVDPGTARISRYSQRTKVQRLPIEAISQASANQRSGRCGRLSAGVCIRLYSEEDYLS
RPEFTDPEILRTHLASVILQMSALGLGDVAAFPFVEPPDRRNISDGVQLLQELGALDPAE
TDLRKRLTPLGRRLAQLPVDPRLGRMVLEGERNGCLREVMVIAAALSIQDPRERPEDRQQ
AAAEQHARFVDKNSDFVSLLNLWEYLQEQQKESSSSRFRRMCRTEFLNYLRVREWQDVYG
QLRQVARTLGATLNDVPADHDRIHQALLAGLLSQVGLKDTDKNEYLGARNAKFAIFPGSA
LFKKPPRWVMAAELVETSRLWGRIAGRVEPDWIEKAAGHLVRRSYSEPHWEKKQAAVMAL
ERVTLYGIPLVAGRKVNFGRIDPETSRDLFIRHALVEGDWDTRHRFFQENRELLAEVEDL
EHRARRRDILVDDETLFEFYDQRIPADVVSGRHFDSWWKKTRHDSPDLLTFDRSMLVNEQ
AAGIGEADYPDSWQQGDLRLRLTYQFEPGTDADGVTVHIPLAVLNQVTEAGFDWQIPGLR
AELVESLLRSLPKPLRRHVVPVPDCAAAVLRRMRPGTAPLLDALEDALRRQVGVVVPRDA
WQLDRVPDHLKITYRVVDERQQALAEGRDLAELRERLRPRLRETLSASARGVEKSGLRDW
TIGDLDRTHRAPQGGYQVTSYPALVDEGDEVAVRLFDTEAEQRQAMWAGTRRLVLLNAPT
PIKLIQGRLSNQTKLALTHNPHGGVGALLDDCASGAADRLIARHGGPAWSQEDFATLRGR
VRAELPPLMTEIVGTVEQVLTEWRSVELRLKDVARHAPKDSIADIRTQLGGLVFPGFVTA
VGAQRLPHLVRYLRGVARRLEKLPENPARDADWTAKVAAVTEAYERRAARVPATAPPSKG
LRQVRWAIEELRLSYFAQTIKTAYPVSDKRIMKALEQLDV
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgagaacgccgcctgccacctctcccctcgccgatctgtcggcacgcctgcccgacctg
atgctgcgggatcgacatcgcctcggccgccgcctggaaggtctgcggcgtggacgcgac
tcccgaggcgccgctcgcgacacggcgttggccgcggtcgccgccgagatcgactcggcc
gagctgcgggtggcacgccgccgcgcggccgtgccgaagatcgactatcccgccgagttg
cccgtagggcaacgcaaggacgagatcctcgcggccgtccgcgatcaccaggtggtgatc
ctcgccggcgagaccgggtcgggcaagaccacccagctgcccaagatctgcctcgaactc
gggcgcggtgtgcacgggctgatcggtcacacgcagccgagacggctggcggcccgcacc
gtggccgagcgtgtcgccgaggagctgcacaccgagctgggcgacgccgtcggctacgcg
gtgcgcttcaccgatcgggtcggcgaggacacgctggtgaagctgatgaccgacggcatc
ctgctcgccgagatccagcgagaccggatgctgcggcagtacgacacgatcatcatcgac
gaggcgcacgaacgcagcctgaacatcgacttcctgctcggctatctcaaggatctgcta
ccccgcaggcccgacctgaaggtgatcatcacctccgcgacgatcgacccggagcggttc
tcccgacacttcggcggcgcgccgatgatcgaggtgtccgggcggacctacccggtggag
gtccggtaccggccggtggtcaccgacgaggtcgaacgcgaccaggttcaggcgatctgc
gacgcggtggacgagctggcggccgaggggcccggcgacgtcctggtgttcctcagcggc
gaacgggagatccgcgacaccgcggacgccctggtgaagcaggagctgcgcaacaccgag
gtggtgccgctctacgcccggctgtccgcgcgcgagcagcatcgagtgttccagccgcac
accggtcggcgcatcgtgctggccaccaacgtcgccgagacgtccctgaccgtgccgggc
atcaagtacgtcgtcgaccccgggaccgcccgcatctctcgatacagccagcggacgaag
gtgcagcggctccccatcgaggcgatctcgcaggcgtcggcgaatcaacggtccggtcgt
tgcggcagactctcggcgggggtctgcatccggctgtactcggaggaggactacctctcc
cgtccggagttcaccgatccggagatcctgcgtacccatctggcctcggtgatcctccag
atgagcgccctgggcctcggcgatgtggcggcgttcccgttcgtcgaaccgccggaccgg
cgcaacatctccgacggcgtgcagctcctccaggagctcggcgcgctcgatcccgccgag
accgacctgcgcaagcggctgaccccgctcggccgcaggctcgcgcagcttccggtggac
ccccggctgggtcggatggtgttggagggtgagcgcaacggctgtctgcgcgaggtgatg
gtgatcgccgccgccctgtccatccaggacccccgggagagaccggaggacagacagcag
gcggcggccgagcagcatgcccggttcgtcgacaagaactccgacttcgtgtcgctgctg
aacctgtgggagtacctccaggaacagcagaaggagtcgtcgtccagccggttccgccgg
atgtgtcgcaccgagttcttgaactacctgcgggtccgcgagtggcaggacgtctacggc
cagcttcgacaggtggccaggaccctcggcgccacgctcaacgacgtgcccgccgatcat
gatcgaatccatcaggcgctgttggcggggctgctctcccaggtcgggctcaaggacacc
gacaagaacgagtacctgggcgcccgcaatgccaagttcgcgatcttcccgggctcggcg
ttgttcaagaagccgccgcgctgggtgatggcggccgagctggtcgagacgtcacggctg
tggggccggatcgcgggccgcgtcgagccggactggatcgagaaggccgcggggcacctg
gtccggcgtagctacagcgagccgcactgggagaagaagcaggccgcggtgatggcgctc
gagcgcgtgacgctgtacggcatcccgctggtggcgggccgcaaggtgaacttcggccgg
atcgatccggagacctcacgagatctcttcatccggcacgcgctcgtggagggcgactgg
gacacgcggcaccgcttcttccaggagaaccgggaactgctcgccgaggtcgaggacctc
gagcatcgagcccgccgccgcgacatcctcgtcgacgacgagacgctgttcgagttctac
gaccagcgcatcccggccgacgtggtctccggcaggcacttcgactcctggtggaagaag
accaggcacgacagcccggatctgctgaccttcgaccggtcgatgctggtcaacgaacag
gcggcggggatcggcgaggcggactacccggacagctggcagcagggggacctgcggctg
agactcacctatcagttcgagccgggcaccgacgcggacggcgtgaccgtgcacatcccg
ctcgccgtgttgaaccaggtgaccgaggcgggcttcgactggcagatcccggggctgcgc
gccgagctggtggagtcgctgctgcggtcgctgcccaagccgctgcgcaggcacgtcgtc
ccggttccggactgcgcggcggcggtgctgcggcgcatgcggcccggtacggcaccgctg
ttggacgccctggaggacgcgctgcgcaggcaggtgggcgtcgtggtgccccgggacgcc
tggcagctggaccgggtgcccgaccatctgaagatcacctaccgcgtcgtggacgagaga
cagcaggccctcgccgagggacgtgacctggccgagctgcgtgagcggctgcgtcccagg
ctgcgcgagaccctgtcggcctcggcgcggggcgtggagaagtccggactgcgcgactgg
accatcggcgatctggacaggacccatcgcgcgccgcaggggggctaccaggtcacctcg
tacccggcgctggtcgacgagggcgacgaggtggcggtccggctcttcgacaccgaggca
gagcagcgacaggcgatgtgggcgggcacccgacgactggtcctgctcaacgctccgacg
ccgatcaagctgatccagggcaggctgagcaatcagacgaagctcgcgctcacccacaat
ccgcacggcggggtgggcgccctgctcgacgactgcgcctcgggtgccgccgaccggctg
atcgcccgacacggcggccccgcgtggtcgcaggaggacttcgcgacgctgcgcggccgg
gtgcgggcggagcttccgccgctcatgacggagatcgtgggaacggtggagcaggtcctc
accgagtggcgctcggtggaactgcggctcaaggacgtcgcccggcatgcgccgaaggac
tcgatcgccgacatccgcacgcagctgggcgggctggtgttccccgggttcgtcaccgcc
gtcggcgcgcaacggctgcctcacctggtgcgttacctgcgcggagtcgcgcggcgtctg
gagaagctgccggagaacccggcccgcgacgccgactggaccgccaaggtcgccgccgtc
accgaggcctacgagcggcgggcggcacgggtgcccgcgacggcgccgccgagcaagggg
ctgcgccaggtgcgctgggccatcgaggagctgcgactcagctacttcgcgcagacgatc
aagaccgcgtacccggtgtcggacaagcggatcatgaaggcgttggagcagctggacgtc
tga
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