Aeromonas hydrophila AL06-06: RY45_01260
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Entry
RY45_01260 CDS
T03748
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ahh
Aeromonas hydrophila AL06-06
Pathway
ahh03030
DNA replication
ahh03410
Base excision repair
ahh03420
Nucleotide excision repair
ahh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ahh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RY45_01260
03410 Base excision repair
RY45_01260
03420 Nucleotide excision repair
RY45_01260
03440 Homologous recombination
RY45_01260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahh03032
]
RY45_01260
03400 DNA repair and recombination proteins [BR:
ahh03400
]
RY45_01260
Enzymes [BR:
ahh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RY45_01260
DNA replication proteins [BR:
ahh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RY45_01260
DNA repair and recombination proteins [BR:
ahh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RY45_01260
NER (nucleotide excision repair)
GGR (global genome repair) factors
RY45_01260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AJQ52781
LinkDB
All DBs
Position
247080..249833
Genome browser
AA seq
917 aa
AA seq
DB search
MAPSNPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSLRKQYPDCHVAV
VFDAKGKTFRDDIYPEYKANRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADDVIGT
LARQATEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELIIDYL
ALMGDKVDNIPGMTGVGEKTALALLQGIGSIDEIAANLDKVAALGFRGSKAFADKFREQE
EQVRLSYVLATIKTDVALEQSLEELQLGPIDKEALLAVYREYELRNLIKELESGGAEESE
AEGDDEGAAPVAAIETDYRCILDEAEFDEWLARLQVAPLFAFDTETTSLDYMEARVVGVS
FAIEPGKAAYVPFGHDYLGAPVQLTEAVVLGKLKPLLEDPARLKVGQNLKYDRNVLLNHG
IELQGIAYDTMLESYVLNSTASRHDMDSLARRYLNAETISFEDIAGKGVKQLTFNQIELE
QAAPYAAEDADITLRLHQTLWGKLSAEPGLAKVFSEIELPLLPVLARMERLGTTIEPKLL
HQQSQEIEVRLAELEKQAHELAGQEFNLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEE
VLAELAETYELPQLLMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVAATGRLSST
DPNLQNIPVRNEQGRRIRQAFIPCAGYKLVAADYSQIELRIMAHLSGDKGLLTAFAEGKD
IHKATAAEVFGVALEAVTSDMRRSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYF
ERYPGVLEYMERTRQQADAQGYVETLFGRRLYLLDIKSRNAGLRKAAERAAINAPMQGTA
ADIIKRAMINVDGWIRGIEDQSIRMLMQVHDELVFEIREEKLEEYIAIIKEKMSAAAELH
VPLVVEAGTGDNWDQAH
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggcccctagcaacccccttattctggtcgacggctcttcatatctttaccgcgccttc
tttgcctcccagcaggccgatctgcgcacctcgaccggtttgccgagcggcgccgtccgt
gtcatggccaacatgatgcgcagcctgcgcaagcagtaccccgactgccacgtggccgtg
gtgttcgatgccaagggcaagaccttccgcgacgacatctatcccgaatacaaagccaac
cgggccagcatgccggacgatctgcgcagccaggttgcccccatccaccagatgatcaag
gcgatgggtttccccttcctgatggtggagggagtggaggccgacgacgtgatcggcacc
ctggcccgtcaggcgaccgagaagcagctgccggtgctgatcagcactggcgacaaggac
atggcgcagctggtctccgaccatgtcaccctgatcgacaccatgaaggacgtgaagacc
gatcgggaaggggtgatcgagaagttcggcgtaccgcccgagctcatcatcgactacctg
gccctgatgggggacaaggtggacaacattcccggcatgaccggcgtcggcgagaagacc
gcgctggccctgctgcaggggattggcagcatcgacgagatcgccgccaacctcgacaag
gtggctgcgctcggtttccgtggctccaaggcgtttgccgacaagttccgcgagcaggaa
gagcaggtgcgcctctcctacgtgctggccaccatcaagaccgacgtggcgctggaacag
agtctggaagagctgcagctcggccccatcgacaaagaggctctgctggcggtctaccgt
gagtacgagctgcgcaacctgatcaaagagttggagtccggcggcgctgaggagagcgaa
gccgagggtgatgatgaaggtgccgcaccggtagccgccatcgaaaccgactatcgctgc
atcctggacgaggccgaattcgatgagtggctggcccgtctgcaggtggcaccgctgttt
gccttcgataccgaaaccaccagtctcgactatatggaagcgcgcgtcgtgggcgtctcc
tttgccatcgagccgggcaaggcggcctacgtccccttcggccacgactatctgggggcg
ccggtgcagctgaccgaggccgtggtgctcggcaagctcaaaccgctgctggaagatcca
gcccgtctcaaggtggggcagaacctcaagtacgatcgcaacgtactgctcaatcacggt
atcgagctgcagggcatcgcctacgacaccatgctcgagtcctatgtgctcaactctacc
gccagccgccacgacatggattccctggcccgcaggtatctgaacgccgagaccatctcg
ttcgaggatatcgccggcaagggggtgaagcagctcaccttcaaccagattgaactggag
caggcagccccctatgcggcggaagatgccgacatcaccctgcgtctacatcagacgctg
tggggcaagctctctgccgagccgggtctcgccaaggtgttcagcgagatcgaattgccg
ctgctgccggtattggcgcggatggagcgactcggtaccaccatcgagcccaagctgctg
caccagcagagtcaggagatcgaagtgcgtctggcagagctggagaaacaggctcacgag
ctggccgggcaggagttcaacctctcctcgcccaagcagctgggggagatcctcttcacc
aagctggggctgccgatcatcaaaaagactcccaagggcgcgccatccactgcggaagag
gtgctggccgagctggcggagacctatgagttgccgcaactgctgatggagcaccgtggg
ctggccaagctcaagtccacctacaccgataagctgccgctgatgatcaagccgcagacc
gggcgggtgcacacctcctatcatcaggcggtggcggcgaccggtcggctctcgtccacc
gatcccaacctgcagaacatcccggtacgcaacgaacaggggcgccgcatccggcaggcc
ttcatcccgtgcgccggttacaagctggtggcggcggactactcccagatcgagctgcgc
atcatggcgcacctctccggtgacaaggggttgctgaccgccttcgccgagggcaaggac
atccacaaggcgaccgctgccgaggtgttcggagtagcgctcgaggcggtgaccagcgac
atgcgtcgcagcgccaaggcgatcaacttcggcctcatctatggcatgagtgccttcggt
ctggccaagcagctggggatcggccgtgccgaagcgcagaagtacatggatctctacttc
gaacgctacccgggtgtgctggagtacatggagcgtacccgccagcaggcggatgcccag
ggctatgtcgagactctgtttggccgccgcctctatctgctggatatcaagtcccgcaac
gccggtctgcgcaaggcggccgaacgggccgccatcaacgcccccatgcagggtacggcc
gccgacatcatcaagcgcgccatgatcaatgtggatggctggatccgcgggattgaagac
cagtcgatccgcatgctgatgcaggtacacgatgaactggtgttcgagatccgcgaagag
aagctggaggagtacatcgccatcatcaaggagaagatgtcagccgcagctgagctgcat
gtgccgctggtggtggaggcgggtaccggtgacaactgggatcaggcccactga
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