Aeromonas hydrophila AL06-06: RY45_11665
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Entry
RY45_11665 CDS
T03748
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ahh
Aeromonas hydrophila AL06-06
Pathway
ahh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RY45_11665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahh03019
]
RY45_11665
03009 Ribosome biogenesis [BR:
ahh03009
]
RY45_11665
Enzymes [BR:
ahh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RY45_11665
Messenger RNA biogenesis [BR:
ahh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RY45_11665
Ribosome biogenesis [BR:
ahh03009
]
Prokaryotic type
rRNA processing factors
RY45_11665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AJQ54705
LinkDB
All DBs
Position
2540016..2543147
Genome browser
AA seq
1043 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSGLTVPDGMGLIVRTAGVGKSPEEL
EWDLNVLLNHWDSIHKASQSRSAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERA
KAHIELVRPDFLNRVKLYKGEVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RLREAVHQDRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLAL
SILRLIEEEAMKDNTEQVHGQVPVDVAAYLLNEKRASIASLEQRNDVRVYIIPNQHLETP
HYEVTRIRQNEIPEAASYELKTEIAKPVYQPKQAQVIEREQPLLQGFVQAPQPAPAAPAP
VAAPAAPAAPEAGLFGKLFKAISGLFGSDTAPADVKAPADKPAAQREARKDEGHRHQRDE
TRSRGQRGRRDDSRGNRSPADTAEKREAGANREGGENRNRRPRKEREPRQEREARGEVRE
QRMEREPREAREPRQEREPRAPRPAREPRAPREPRAEVVVDAVETVDTTMVNDEPRLEKE
QKVAERRERRQLRKQIRVDAPASDVAALPADAPVVAEETSDAVEQHDEQAEGQRRSRRTP
RNQRIEGQRRKRINEDARSQREDEEQSAEGTTPTLTAAAQADAAQVKVEEPAVPVITIPS
AEAVAAALQASAALTEHVVPETVVAEAHEQAEVVAAEPVVTEAVVAEEAQAAVVNEPVVA
EVAAPVAAEVVAVEAPAIETAVVEAAPAAPAVEEAAPAVVVAEVAPLVVEQPAPVAEPVI
ADEAPVAAAGAAPVAKQVKRGGGLLAGARKASAPMATPAAAPALPVREPVDHAPLVRSEV
ASSGRHGGSTAAVNVATSPAGRP
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcgactcaggaagaagagttgcgcgtagcgctggttgac
ggacaacagctctacgatctggatattgaaagtccgggacacgagcagaaaaaagcgaac
atttacaagggtaaaatcacccgcgtagaacccagtcttgaagctgcttttgtcgactat
ggcgccgagcgccacggtttcctgccgttaaaggaaatcgcccgcaattacttcccctcc
ggttattcctatcagggtcgtcccaacatcaaagaagtggtccgcgaaggccaggaagtg
atcgtccagatcgacaaggaagagcgtggcaccaagggtgcagccctcaccacctttatc
agtctggccggcagctacctggtactgatgccgaacaatcctcgcgccggtggtatctcc
cgccgtatcgaaggtgatgaacggactgaactgaaagaagccctgagcggcctgaccgtg
ccggacggcatgggcctcatcgtgcgtaccgccggtgtgggcaaatccccggaagagctg
gaatgggatttgaacgttctgctcaaccactgggattccatccacaaggcgtcacagagt
cgctctgcaccggtgctgatccatcaggaaagcaacgtcatcgtgcgtgccatccgtgac
tatctgcgtcgcgatgtcggcgagatcctgatcgacaacccggtcatcttcgagcgtgcc
aaggcgcatatcgagctggttcgtcccgatttcctcaatcgcgtgaagctgtacaagggt
gaagttgccctgttcaaccacttccagatcgagagccagatcgagtcggccttccagcgt
gaagtgcgtctgccctccggcggcagcatcgtcatcgatccgaccgaagcgctgacctcc
atcgatatcaactcctcccgcgccaccaagggcggcgatatcgaagagactgcgctgcaa
accaacctggaagcggccgacgaaattgcccgtcaattgcgtctgcgtgacctgggtggc
ctgatcgtcatcgacttcatcgacatgaccccggttcgtcatcagcgcgaagtggaaaat
cgtctgcgtgaagcggtgcatcaggaccgtgcccgcatccagctgggccggatctcccgt
ttcggtctgctggagatgtctcgccagcgtctgcgcccctccctcaacgagtccagcagc
catatctgccctcgttgccagggtcagggtgtgatccgtgacaacgaatcactggcgttg
tccatcctgcgtctcatcgaagaagaggccatgaaggacaacaccgagcaggttcacggt
caggtgccggtggatgttgccgcctatctgctcaacgagaagcgtgcctccatcgccagc
ctggaacagcgcaatgatgtgcgtgtctacatcattccgaaccagcatctggaaaccccg
cactacgaagtgacccgcatccgtcaaaacgagatcccggaagcggccagctacgagctg
aaaaccgagattgccaagccggtctaccagccgaagcaggctcaggtgatcgagcgcgaa
caaccgctgctgcaaggttttgtccaggcgccccagccggcccccgccgcgccggcccca
gttgcggcgcctgctgcaccggccgcgcccgaagccggtctgtttggcaaactgttcaag
gccatctccggcttgttcggttccgacaccgcccctgccgacgtgaaggcccctgccgac
aaaccggccgcccagcgcgaagcacgcaaggatgagggtcatcgtcatcaacgcgatgaa
acccgcagccgtggtcaacgtggtcgtcgtgatgacagccgtggtaaccgcagccctgcc
gataccgcagagaagcgggaagcgggtgccaaccgtgaaggcggtgaaaaccgcaaccgt
cgtccccgcaaagagcgtgagccgcgccaggagcgtgaagcccgtggcgaagtgcgtgaa
cagcgcatggaacgtgaacctcgcgaggctcgtgagccgcgtcaggaacgcgaaccccgc
gccccgcgcccggctcgtgagccccgtgctccgcgtgaacctcgtgccgaagtggtcgtt
gacgcggtagaaaccgtcgataccaccatggtcaatgacgagccgcgtctggaaaaagag
cagaaagtggctgagcgccgcgaacgccgtcaactgcgcaagcagatccgggtcgatgcc
ccggccagcgacgttgccgccctgcctgccgatgctccggttgttgccgaagagacctcc
gacgcagtagagcagcacgatgagcaggctgaaggccagcgtcgttcccgccgtacgccg
cgcaatcagcgtatcgaaggccagcgtcgcaagcgcatcaatgaagatgcccgcagccag
cgtgaagatgaagagcagtctgccgaaggcactacccctaccctgactgcagctgcccag
gcagatgccgcccaggtgaaagtggaagagccggcagttcctgtcatcaccatccccagt
gctgaagcggttgccgccgccctgcaggcctctgctgcgctgactgagcatgtcgtgcct
gaaaccgttgtggccgaggctcacgagcaggctgaagtcgtggccgcagagccagtggta
accgaagcggtagttgctgaagaagcccaggcagcggtggtcaacgagccagtagttgca
gaagttgcggccccggtcgcagcggaagtcgttgctgtcgaggctccggccatcgagact
gccgtagttgaagcggcacctgctgcgccagcagttgaagaagcggctccggcagtggtt
gtagccgaggttgcccctttagtggttgaacagccagctccggtcgctgagcctgtcatc
gctgacgaggctccggtagccgctgccggagcagcccctgtggccaagcaagtcaaacgt
ggtggtggcctgctggccggtgcccgcaaggcctctgcgccgatggcaacaccggctgca
gcccctgccctgccggtacgcgagccggttgatcatgcgccgctggtgcgcagtgaagtg
gcaagctcaggtcgccatggcggcagcaccgctgccgtcaacgttgcaaccagcccggcc
ggtcgtccttga
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