Aeromonas hydrophila AL06-06: RY45_11765
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Entry
RY45_11765 CDS
T03748
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ahh
Aeromonas hydrophila AL06-06
Brite
KEGG Orthology (KO) [BR:
ahh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahh03019
]
RY45_11765
Enzymes [BR:
ahh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RY45_11765
Messenger RNA biogenesis [BR:
ahh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RY45_11765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
nSTAND3
AAA_22
ResIII
AAA_23
AAA_30
PhoH
NTPase_1
NACHT
HA2_N
TsaE
T2SSE
AAA_11
AAA_25
SLFN-g3_helicase
ABC_tran
SRP54
Motif
Other DBs
NCBI-ProteinID:
AJQ54725
LinkDB
All DBs
Position
complement(2566033..2569947)
Genome browser
AA seq
1304 aa
AA seq
DB search
MSLSIEALRRRLPACMNLDARRLSSRLHGAKKLPEGKQAAVLETIAADLDAAQARYQSRL
AGVPKVTYPDNLPVSQKQAEIAKAIEEHQVVIIAGETGSGKTTQIPKICLALGRGVKGFI
GHTQPRRLAARTVAARIAEEMESELGHYVGYKVRFTDQVSEQTHIKLMTDGILLAEIQND
RMLTQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPQRFSRHFNKAP
VIEVSGRTYPVEVRYRPLFVDKKSSDKSEGLEERDELQGIFDAVEELAREGLGDILIFMN
GEREIRDTADALRKLNLRDTEVLPLYARLSNAEQNKVFQQHAGRRIVLATNVAETSLTVP
GIRYVIDPGTARISRYSWRTKVQRLPIEPVSQASANQRKGRCGRVADGICIRLYSEEDFN
GRPAFTDPEILRTNLASVILQMLALGLGNMEAFPFVEPPESRHIKDGLTLLKELEAVREQ
PATGDREAKLQLTETGRQLSRIPLDPRLAKMVISAAQTGCLSEVMVITAALSIQDPRERP
MEKKQAADEQHRRFEDKDSDFLAFVNLWNYLKEQQDALGSNPFRRMCQKEFLSYLRVREW
QDIHFQLRQTVKELGFKANHEPADFKTVHCALLTGLLSHIGNKDLEKPEFLGARNGRFHL
FPASGLFKKPPKWVMAAELVETSRLYARINAKIEPEWVEPLAGHLIKLHHSDPHWSKKNG
AVMAKEKVTLYGLTLVNERTINFSRIDPALCRELFIRRALVEGDFETRHRFFSDNRKLLA
EVEALEHKSRRRDILVDDEDLFRFYDARLPEEVISARHFDKWWKEAQKQDAELLNFEKEM
LMKGDAAHISDLDYPNFWQQGRLKLKLTYQFEPGEAADGVTLHIPLPLLNQVEVKGFEWL
IPGLRHELLVALIKSMPKPMRKNFVPAPNYADALLASINPEQGPLLDEMERQLRRMTGVT
VPRESWDWAAVPDHLKLTFRVVDDKYKKVAEGKDLEALKESLRGKVQETLSQVADDDIEQ
SGLTLWSFGELPQEYSQKRGGFEVKAYPALVDEKDSVAIQLVESPVVQQQLMWAGQRRLV
LLNVPSPIKYLQEKLPNKAKLGLYFNPFGKVAELIDDCIACGCDKLIEQHGGMAWDEAGF
EALKEYVRAELNDAVVEVAKQVEAVLTLSHEIKKRLKGKMQLDTAFAMSDIQQQLGNLIH
KGFVTETGWQRLPDLLRYLRAIERRLEKLAIDPNRDRVYMLKVHSVESEYKALLAKIPKS
QLIPTEVANIRWMIEELRVSFFAQNLGTPYPVSDKRVLNAIAQC
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
ttgtctctctctatcgaggcgctgcgccgccgtctccctgcctgcatgaatctcgacgcc
cgccgtctctccagccgtctgcacggggccaagaagctgcccgagggcaaacaggctgcc
gtactcgagaccatcgccgccgatctggatgcggcacaggcgcgctaccaatcccgtttg
gccggagtgcccaaggtgacctatccggacaacctgccggtcagccagaagcaggcggag
atcgccaaagccattgaagagcaccaagtggtgatcatcgccggcgaaaccggctcgggc
aaaaccacccagatccccaagatctgtctggcgctcgggcgcggagtgaagggcttcatc
ggccacacccagccgcgtcgtctggcggcccgtaccgtggcggcccgtattgcagaggag
atggagtccgaactcggccactacgtgggttacaaggtgcgctttaccgatcaggtgagc
gagcagacccacatcaagctgatgaccgacggcatcctgctggcggagatccagaacgac
cggatgctgacccagtacgacaccatcatcatcgatgaggcccacgagcgcagcctcaac
atcgacttcattctgggctacctcaagcagctgttgcccaagcgccccgatctcaaggtg
atcatcacctcggccaccatcgacccgcagcgcttctcccgccatttcaacaaggctccg
gtgatcgaggtctccggtcgcacctatccggtggaggtgcgttaccgcccactatttgtt
gataaaaaaagcagtgacaagagcgaagggctggaggagcgcgacgagctgcaggggatc
ttcgatgcggtggaagagctggcccgcgaagggctgggggacatcctcatcttcatgaat
ggcgagcgggagatccgcgataccgccgacgccttgcgcaagctcaatctgcgggatacc
gaggtgctgccgctctacgctcgcctctccaacgccgagcagaacaaggtgttccagcaa
cacgccggccggcgcatcgtgctggctaccaacgtggcggagacctcgctgacggtgccg
ggcattcgttacgtcatcgatccgggcaccgcccgcatcagtcgctactcctggcgcacc
aaggtgcagcgcctgcctatcgagccggtctcccaggccagcgccaaccagcgtaagggg
cgctgcggccgggtggcggacggcatctgtatccgcctctactcggaagaggatttcaac
ggccgtccggcctttaccgatccggagatcctgcgcaccaacctggcctccgtcatcttg
cagatgctggcgctcggccttggcaacatggaggccttccccttcgtcgagccgcctgag
tcgcgccacatcaaggatggcctgaccctgctcaaagagctggaggcggtgcgcgagcag
cccgccaccggcgatcgcgaagcgaaactgcagctgaccgagaccggtcgccagctctcg
cgcattccccttgatccgcgtctggcgaagatggtgatcagtgcggcgcagaccggctgt
ctgagcgaggtgatggtgatcaccgcggccctcagcattcaggatccccgcgaacggccc
atggagaagaagcaggccgccgacgagcagcacagacgctttgaggacaaggattccgac
ttcctcgccttcgttaacctctggaactatctgaaagagcagcaggatgccctaggcagc
aacccgttccgccgcatgtgccagaaggagtttctctcctacctgcgggtgcgcgagtgg
caggacattcacttccagctgcgtcagacggtgaaagagcttggttttaaagccaaccat
gaaccggcggatttcaagacggtgcactgcgcgctgctgaccggcctcttgagccacatc
ggcaacaaggatctggaaaagcccgagttccttggggcccgtaacggccgcttccatctg
ttcccggcctcgggtctgttcaagaagccgcccaagtgggtaatggccgccgagctggtg
gagacctcgcgcctctacgctcgcatcaacgccaagattgaacccgagtgggtggagcca
ctggcagggcacctcatcaagctgcaccacagcgacccccactggtcgaagaaaaatggc
gccgtgatggccaaggagaaagtgacgctttatggcctgactctggtcaacgagcgcacc
atcaacttcagccgcatcgatccggcgctgtgccgtgagctgtttatccgccgcgccctg
gtggagggggatttcgagacccgccaccgcttcttcagcgataaccgcaagctgctggcc
gaggtggaggcgctggagcacaagtcccgtcggcgcgacatcctggtggatgacgaggat
ctgttccgcttctacgatgcccgcttgccagaggaggtgatctccgctcgccatttcgac
aagtggtggaaagaggcgcaaaagcaggacgccgagctgctcaacttcgagaaagagatg
ttgatgaagggggatgcggcccacatcagcgatcttgactaccccaacttctggcagcag
gggcgcctcaagctcaagctgacctatcagttcgagccgggggaggcggcggatggcgtg
accctgcatattccgctgccgctcctgaaccaggtggaggtgaaggggttcgagtggctg
atcccggggctgcgtcacgagctgttggtggccctcatcaagtcgatgccaaagccgatg
cgcaagaacttcgtgccagcgcccaactatgccgatgcgctgctcgccagcatcaacccg
gagcaggggccgctcttggacgagatggagcgccagctgcgccgcatgaccggtgtgacc
gtgccccgtgaatcctgggactgggctgcggtgcccgatcacctgaaactcaccttccgg
gtagtggacgacaaatacaagaaggtggcggaaggcaaagatctggaggcattgaaagag
tcgctgcgcggcaaggtgcaggagaccctctcccaggtggcggacgatgacatcgagcaa
tccggcctcaccctgtggagctttggcgagctgccgcaagagtacagccagaagcggggc
gggtttgaggtgaaagcctatccggcgttggtagatgagaaggattcggtcgccatccag
ctggtggagagcccggtggtgcagcagcagctgatgtgggcgggccagcgccgattggtg
ctgctcaacgtgccatcgcccatcaagtatctgcaggaaaagctgcccaacaaggccaag
ctggggctctatttcaacccgtttggcaaggtggcggagcttatcgatgattgcatcgcc
tgcggctgtgacaagctgattgagcagcacggcggcatggcgtgggacgaggccggtttc
gaggcactcaaggagtatgtccgcgccgagctcaacgacgccgtggtggaggtggccaag
caggtagaagccgtactgacgctgtcccatgagatcaagaaacggctcaagggcaagatg
cagctcgacaccgcctttgccatgtcggatatccagcagcagctcggcaacctcatccac
aagggctttgtcaccgagaccggctggcagcggctgcctgacttgctgcgctacctacgg
gccatcgagcggcgcctggagaagctcgccatcgatcccaaccgggatcgggtctacatg
ctcaaggtgcacagcgtggagtcggagtacaaggcgctgctggccaagatccccaaatcc
cagcttattcccaccgaggtggccaatattcgctggatgatcgaggagctgcgagtatcg
ttttttgcccagaatctgggcaccccctatccggtctccgataaacgggtgctgaacgct
atcgctcagtgctaa
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integrated database retrieval system
