Aeromonas hydrophila AL06-06: RY45_11820
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Entry
RY45_11820 CDS
T03748
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ahh
Aeromonas hydrophila AL06-06
Brite
KEGG Orthology (KO) [BR:
ahh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ahh03016
]
RY45_11820
Enzymes [BR:
ahh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RY45_11820
Transfer RNA biogenesis [BR:
ahh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RY45_11820
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DNA_pol_A_exoN
CCB2_CCB4
Motif
Other DBs
NCBI-ProteinID:
AJQ54736
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All DBs
Position
complement(2581405..2582544)
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AA seq
379 aa
AA seq
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MALINAQAQMHYQLISQQAELDQYLASLADVPLAIDTEFVRTRTYYPQLGLFQIYDGEHL
ALLDPLTLDLSSLWQRLGRAGQIAILHASGEDLELIQHQAGHLPNQMHDTQLAAAFLGYG
VSVGFGALVNEFLAVELEKDQARTDWLARPLTPRQLEYAAADVFYLLPLYEKVMAKLHES
GKFAWFEQECQNHSARKTQTSDPRQAYLDIVNAWQLGRRELAILRELAAWRQQEAVRRDL
ALNFVVKELHLFKVAERRPTSLRDLNELGLAPIEIKIHGKRMLDIVAAAQQSDPDSWPEP
IRRLVDYPQYKAELKRIKGMVEEKAKASNIPPELVASKKIIHQYFTWSWRMSDEERARAD
KPMLLQGWRHELVGHLLAQ
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
ttggccctgatcaacgcgcaggcacagatgcactatcaactcatttcacagcaagccgaa
ctggatcagtatctcgcctccctggccgacgttcccctggccatcgatactgaattcgtt
cgcacccgcacctactatccccagctgggcctgttccagatctatgacggtgagcatctg
gcactgctggatccgctgacgctggatctctcctccctctggcaacggctcggccgggca
gggcagatcgccatcttgcacgcctccggtgaagatctggagcttatccagcatcaggcg
ggccatctgcccaaccagatgcacgacactcagctggcagccgccttcctgggttacggg
gtatcggtcggttttggcgccctggtcaacgagtttctcgcggtggagctggaaaaggat
caggcccgcaccgactggctggcacgcccgctgactccccgtcagcttgagtacgcggcg
gccgacgtgttttatctgctgccgctctacgagaaggtgatggccaagctgcatgagagc
ggcaagttcgcctggttcgagcaggagtgccagaaccactccgcccgcaagacccagacc
agtgatccccgccaggcctatctcgacatcgtcaatgcctggcaactgggacgccgcgag
ctggctatcttgcgtgagctggccgcctggcgtcagcaggaggcggtgcgccgggatctg
gcactcaactttgtggtcaaagagctgcatctgttcaaggtggcggagcgcagaccgacc
tcgctgcgcgatctgaacgagctggggctggcccccatcgagatcaagatccacggcaaa
cggatgctggatatcgtggccgcggcccagcagagcgatcccgacagctggcccgagccc
attcgccggctggtggactacccccagtacaaggccgagctcaagcgcatcaaggggatg
gtggaagagaaggccaaggccagcaacattccgcccgagctggttgccagcaagaagatc
attcaccagtacttcacctggagctggcgcatgagcgacgaagagcgcgcccgggccgac
aagccgatgctgctgcagggctggcgccatgaactggttggccacttgctggcacagtga
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