Aeromonas hydrophila AL06-06: RY45_17015
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Entry
RY45_17015 CDS
T03748
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ahh
Aeromonas hydrophila AL06-06
Pathway
ahh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RY45_17015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahh03019
]
RY45_17015
03016 Transfer RNA biogenesis [BR:
ahh03016
]
RY45_17015
Enzymes [BR:
ahh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RY45_17015
Messenger RNA biogenesis [BR:
ahh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RY45_17015
Transfer RNA biogenesis [BR:
ahh03016
]
Prokaryotic type
tRNA degradation factors
RY45_17015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
CsrA
OB_RRP5_4th
LppA
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AJQ55704
LinkDB
All DBs
Position
complement(3793799..3795937)
Genome browser
AA seq
712 aa
AA seq
DB search
MNPIVKSFQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTV
NYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVN
PAVSPDIVAMIGASAALAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLDLVVAG
TANAVLMVESEAAILSEEVMLGAVVFGHEQMQAVINAINEFAADVGTKPWNWTAPAVNEA
LKAKVAELATAELGEAYRITEKAVRYETIGAIKARVVEQVIASGVEEDAKKIGEEFHSLE
SRIVRGRVVRGEPRIDGRDPEMIRALSVATGVLPRAHGSALFTRGETQAMVVATLGTERD
AQNIDELTGNRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSADEF
PYVVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDI
LGDEDHLGDMDFKVAGTTEGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAI
QAPRAEISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRIAAVD
GDAAKEAIRRIEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQN
VADYLKIGDVVKVKVLEVDRQGRVRLSIKEANAPTEAAAEPAVAAVEEPAAE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcctattgtaaagtcattccagtacggtcaacacaccgtcactctggaaaccgga
gtgatggcccgtcaagccactgcggccgtcatggtcagcatggacgatacctgcgtattt
gtgaccgtagttggcaagaaagaggccgatcacggccgtgatttcttcccgctgaccgtc
aactaccaggagcgtacctatgctgctggtcgtatcccgggtggtttcttccgtcgtgaa
ggccgtccgagcgaaggcgagaccctgatctcccgtctgatcgaccgtcctattcgtccg
ctgttcccggaaggcttcctcaatgaggttcaggtggttgccaccgtcatgtccgtgaac
ccggccgtttctcccgacatcgttgccatgatcggtgcctccgcggcgctggccatctcc
ggtatcccgtttggcggcccgatcggtgcagcccgcgtgggctacatgaacggtcagtac
gtgctgaacccgaccacgaccgaactgccgcagagcgatctggacctggtggttgccggt
accgccaacgccgtgctgatggttgaatccgaagcggccatcctctccgaagaggtgatg
ctgggtgccgtggtgttcggtcacgaacagatgcaggccgttatcaacgccatcaacgaa
ttcgctgccgacgtcggcaccaagccgtggaactggactgctcctgccgtcaacgaagcg
ctgaaagccaaggtggccgagctggcgacagctgagctgggtgaagcctaccgcatcacc
gagaaggccgtgcgttacgaaaccatcggtgccatcaaggctcgcgtggttgagcaagtc
atcgcttccggcgtggaagaagatgccaagaagattggcgaagagttccacagcctggaa
agccgcatcgtccgtggtcgtgtcgtccgtggcgagccgcgtatcgatggtcgcgatccg
gagatgatccgcgccctgtccgtcgccaccggcgtactgccgcgtgctcacggttctgcc
ctgttcacccgtggtgagactcaggccatggtcgttgccaccctgggtaccgagcgtgac
gcccagaacatcgacgagctgaccggcaaccgcgccgatcgcttcatgttgcactacaac
ttcccgccatactgcgtcggtgaaaccggcatgatgggtagcccgaagcgtcgtgagatc
ggtcacggtcgtctggccaagcgcggcgttgctgccgtgatgccgagcgccgacgagttc
ccgtacgtggtacgcgtggtgtctgaaatcaccgaatccaacggttcctcctccatggcc
tccgtctgtggttcctccctggcgctgatggacgccggtgtgccgatcaaggcctccgtt
gccggtatcgccatgggtctggtgaaggaagaagaaggtttcgtcgtgctgtccgacatc
ctgggtgacgaagatcacctgggcgacatggacttcaaggttgccggtaccaccgaaggt
gtgaccgcactgcagatggacatcaagatcgaaggcatcaccaaagagatcatggagatt
gccctgaagcaagctcgtggtgctcgcctgcacatcctgaaagtgatggacgaagccatc
caggcaccgcgtgccgagatctccgatttcgccccgcgcatccacaccatcaagatcaac
ccggagaagatcaaggacgtcatcggtaaaggtggctccgtgattcgtgccctgaccgaa
gagaccggcaccaacatcgagctggatgatgacggtaccgtccgcatcgccgccgttgac
ggtgatgccgccaaggaagcgatccgccgtatcgaggccatcaccgccgagatcgaagtg
aaccgcatctacgaaggcaaggttgtacgtctggctgacttcggtgccttcgtcaacatc
ctgccgggcaaggatggtctggtgcacatctcccagatcaccgatgcacgcgtgcagaac
gtggccgactatctgaagatcggtgacgtggtgaaggtgaaggtactggaagtggaccgt
cagggccgcgtgcgtctctccatcaaggaagcgaacgccccgaccgaagccgcagccgag
ccggctgttgccgccgtcgaagagccggccgccgaataa
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