Aeromonas hydrophila AL06-06: RY45_18145
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Entry
RY45_18145 CDS
T03748
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ahh
Aeromonas hydrophila AL06-06
Brite
KEGG Orthology (KO) [BR:
ahh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahh03019
]
RY45_18145
Enzymes [BR:
ahh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RY45_18145
Messenger RNA biogenesis [BR:
ahh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RY45_18145
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
HA2_N
AAA_22
ResIII
DUF4037
Motif
Other DBs
NCBI-ProteinID:
AJQ55904
LinkDB
All DBs
Position
complement(4035854..4038301)
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AA seq
815 aa
AA seq
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MSSLPIVSVLPALFAAIDNHASVILQAPPGAGKSTLLPLELVRQNRLPGRIIMLEPRRLA
ARNIAGFLARQLGDKVGERIGLRVRGESRTSSQTRLEIVTEGVLTRMLQQDPELTGVSLV
IFDEFHERSLHADTALAFAIESQQGLRDDLKLLVMSATLDGMALETLLPEAPVVRSEGRG
FPIDYHYRPANRQQWLEPQVGAVVLEALAAHAGSLLVFLPGQGEIERLAQWLEGRLPDEV
TLAPLYGRLDMAAQQAAIEPAPAGRRKLVLTTNVAETSLTIEGISVVVDSGQERRASFDI
KSGVTRLETRPIAKSSATQRAGRAGRLGPGVCYRLWSSEVQERLAEQSPPDILTQELTGL
LLDAAQWGAKVEELPLLDMPPAAAVASAQRLLVALGAMKPEGEQQLTPAGRAMAAFGTHP
RLARMLLRARELEAEGLTGIVADAAFLVALLEEDLRGSERLSVLFHRRQGALRQSAARWF
ERLGARPASAQGQWLGLLCALAWPDRIGKLRSGSRYQLSGGVSCDLVEGHPCQGQGAIIA
IEMGQNERGSRIFIAEPVELDELVRQLPELVSERQWFDWDEREERVRAERQQVLGELVLS
QRPLTDLSDEQKGRCLLQGIRRKGLHVLPWDDASEGLLARLRCARDWLPDEGWPAMDEAS
LLADLEQWLLPAVSGMTRLEQLKKLDMSDILRQSLPWPLPKRLDEALPGHFTAPTGSRVR
IRYQPGQAPVIPVRIQEMFGQAATPCVADGRVALVVELLSPAQRPLQITADLAAFWAGSY
ELVKKEMKGRYPRHYWPDNPLEAMPTRVTKKKMGL
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttccctccccatagtgtcggtgctgcccgcactctttgccgccatcgacaaccat
gccagcgtgatcttgcaggcgccgcccggcgcgggcaaatcgaccctgttgccgctggag
ctggtgcgccagaaccggctgcccggtcgcatcatcatgctggagcccagacgcctcgca
gcgcgcaacatcgcgggttttctggcgcgccagcttggggataaggtgggcgagcgcatc
ggtctgcgggtgcgtggcgagagccgcaccagcagccagacccggctcgagatcgtcacc
gaaggggtgctgacccggatgctgcagcaggatcctgagctcaccggcgtctccctggtc
atcttcgatgagttccacgagcgcagcctgcacgccgataccgcactggccttcgccatc
gagagccagcagggattgcgcgatgatctcaagctgctggtgatgtccgccaccctggat
ggcatggcgctggagaccctgctgccggaggccccggtggttcgctcggaggggcgcggt
tttcccatcgactaccactaccgtcccgccaatcgccagcagtggctggagccccaggtc
ggcgccgtggtgctggaggcgctggccgcccacgccggcagcctgctggtgttcctgccg
ggccagggggagatcgagcggctggcacagtggctggaagggcggttgccggacgaggtg
accctcgcccctctctacggccgcctcgacatggcggcccagcaggcggccatcgagccg
gcacctgcggggcgccgtaagctggtgctcaccaccaatgtggcggagacctcgctcacc
atcgaggggatctccgtggtggtcgacagcgggcaggagcgacgcgcctccttcgacatc
aagagcggcgtcacccggctggagacccgccctatcgccaaatcctccgctacccagcgg
gcgggccgcgccggtcgtctcggccccggtgtctgctaccggctctggagcagcgaggtg
caggagcgcctcgccgagcagagcccgcccgacatcctcactcaggagctgaccggtctg
ctgctggacgccgcccagtggggggccaaggtcgaagagctgccgctgctggacatgccg
ccggccgccgccgtcgccagtgcccagcggctgctggtggccctcggcgccatgaagccg
gagggtgagcaacaactcactcccgctggccgcgccatggcggccttcggtacccatccc
cggcttgcccgcatgctgctgcgcgcgcgcgagctggaggccgagggtctgacagggatt
gtcgccgatgcggctttcctggtggcgctgctggaagaagatctgcgaggatcggagcgc
ctctccgtgctgtttcaccgccgccagggggccctgcgccagagtgcagcccgctggttc
gagcggctcggcgcccgccccgccagtgctcaggggcaatggctggggctgctgtgcgcc
ctcgcctggcccgatcgcatcggcaagctgcgcagcggcagccgctatcagctcagtggc
ggggtgagctgcgatctggtagaaggtcacccctgtcaggggcagggggcgatcattgcc
atcgagatgggtcagaacgagcgcggcagtcgcatcttcatcgctgagccggtggagctg
gatgagctggtgcgccagctgcccgagctggtgagcgagcgccagtggttcgactgggac
gagcgcgaggagcgggtgcgggccgaacgccagcaggtgctcggcgagctggtgctgagc
cagcggccgctgacggatctctcagatgaacagaaggggcgctgcctgctgcagggcatc
cggcgcaaggggctgcatgtgctgccttgggatgacgccagcgaggggctgctggcccga
ttgcgctgcgcccgtgactggctgcctgacgaagggtggccggccatggatgaggcgagc
ctgctggccgacctcgagcagtggctgctgccggcggtgagcggcatgacccggctggag
cagttgaaaaagctcgatatgagcgacatcctgcgccagtctctgccctggccattgccc
aagcggctggacgaggcgctgcccggccactttaccgcaccgaccggcagccgggtgcgg
atccgctatcagccgggtcaggcgccggtgatcccggtgcgcatccaggagatgttcggc
caggccgcgaccccgtgcgtggccgatggtcgggtggcgctggtggtggagctgctctcc
ccggcccagcggccgctgcagatcaccgccgatctggccgctttctgggccggctcctac
gagctggtgaaaaaagagatgaagggacgctacccccgccactactggccggacaatccg
ctggaagcgatgccaaccagggtcaccaagaagaaaatggggttgtag
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