Aeromonas hydrophila AH10: VU14_01525
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Entry
VU14_01525 CDS
T03886
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ahi
Aeromonas hydrophila AH10
Pathway
ahi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ahi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VU14_01525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahi03021
]
VU14_01525
03400 DNA repair and recombination proteins [BR:
ahi03400
]
VU14_01525
Enzymes [BR:
ahi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VU14_01525
Transcription machinery [BR:
ahi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VU14_01525
DNA repair and recombination proteins [BR:
ahi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VU14_01525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AKA15652
UniProt:
A0A081UWK9
LinkDB
All DBs
Position
344635..348939
Genome browser
AA seq
1434 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDSIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIEPGMTNLERSQMLSEEQYLDALEEWGDEFDAKM
GAEAILALLRAIDLEGEVRTMREELDQTNSETKRKKTTKRLKLMEAFLQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLESRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRARINAKGEGMVLSGPKEAEKVYRAG
LADLHARVKVRITEYLRQEDGSLRAHTEMKNTTVGRAILSLILPKGMEYALIDEPKVLTA
AEQADLDANPQNWIKSVSNKALGKKLISRLLNTCYRKQGLKDTVIFADQLMYTGFHYAAL
SGASVGIDDMVIPDAKKDIIAAAEAEVAEIQDQFLSGLVTAGERYNKVIDIWASANERVS
KAMMENLSKERNVNSLGEEEEQASFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSI
IETPIVANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDMVITEDDC
GTTEGLWMTPLIEGGDVVEPLRERVLGRVVADDVIKPGTEDEVLVARNTLLDEQLCDLLE
RNSVDRVKVRSAITCETDFGNCAHCYGRDLARGHLVNKGEAVGVIAAQSIGEPGTQLTMR
TFHIGGAASRAAAESSIQVKNTGSIKLQNAKFVHNSDDKLVITSRSTELTIMDEMGRTKE
SHKLPYGSVLEVKDGQAVNAGETVANWDPHTHPIITEVAGRLHFEHMIDGVTITRQTDEL
TGLSSIVVLDVNERPSAGKEMRPTVKLVDLNGKDVMIPGTDVAAQYFLPGKAIVNLEDGA
NVGVGDAVARIPQESGGTKDITGGLPRVADLFEARQPKEPAILAEISGTISFGKETKGKR
RLVITPTDGGDVYEEMIPKWRNLNVFEGEKVEKGEVLADGPESAHDILRLRGISPVANYI
ANEVQDVYRLQGVKINDKHIEVIVRQMLRKCEILSAGDTDLIEGEQVEVARVKIANRKLV
AEGKTPATFRHILMGITKASLSTESFISAASFQETTRVLTEAAVGGKRDELRGLKENVIV
GRLIPAGTGFAYHHGRINQRAAAARAVGVPQVTADEAQQNLADLLNAAGSFDEE
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactcaagtttttgaaggctcagaccaagaccgaagagtttgacagtatc
aagatcggtctggcctctcctgacatgatccgctcctggtcattcggtgaggtcaaaaag
cctgagaccatcaactaccggactttcaagccggaacgtgatggtctgttctgcgcccgt
atcttcggaccggtgaaggactacgagtgtctgtgcggcaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgtagaagtgacccagaccaaggtccgtcgtgag
cgtatgggccatatcgagctggccagcccgactgcccatatctggttcctgaagtccctg
ccgtcccgtatcggtctgctgctggacatgaccctgcgtgacatcgagcgcgtgctgtat
ttcgaatcctatgtagtgatcgaacccggcatgaccaacctcgagcgcagccagatgctg
tccgaagagcagtacctggacgcactggaagagtggggcgacgaattcgacgccaagatg
ggtgccgaagcaatcctggcattgctgcgcgccatcgatctggaaggcgaagtgcgcacc
atgcgcgaagagctggatcagaccaactccgagaccaagcgcaagaagaccaccaagcgc
ctgaagctgatggaagccttcctgcagtccggcaacaagccggagtggatgatcatgaca
gtgctgcctgtgctgccgccggacctgcgtccgctggtaccgctggacggcggccgtttc
gcgacttccgatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgcttgaag
cgcctgctggatctggctgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcaa
gagtccgtcgatgccctgctggacaacggccgtcgtggccgtgccatcaccggttccaac
aagcgcccgctgaaatccttggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctcggtaagcgtgtcgactactctggtcgttccgttatcaccgtaggtccgact
ctgcgtctgcatcagtgcggtctgccgaagaagatggcgctggagctgttcaagccgttc
atctatggcaagctggaatcccgcggtctggcgaccaccatcaaggccgccaagaagatg
gtggagcgcgaagaagctgtcgtttgggacatcctggacgaagtgatccgcgaacacccg
gttctgctgaaccgtgcaccgaccctgcaccgtctgggtatccaggcgtttgagccgacc
ctgatcgaaggcaaggccatccagctgcacccgctcgtctgtgccgcctataacgcggac
ttcgacggtgaccagatggcggtccacgtaccgctgaccctggaagcccagctggaagcg
cgcgctctgatgatgtccaccaacaacatcctgtcgcctgcctccggtgagccgatcatc
gttccgtctcaggacgtggtcttgggtctgtactacatgacccgtgcccgtatcaacgcc
aagggcgaaggtatggtgctgtccggcccgaaagaagccgagaaggtataccgcgccggt
ctggccgatctgcatgctcgcgtgaaagttcgcatcaccgaatacctgcgtcaggaagac
ggttcgctgcgtgctcacaccgagatgaagaacaccaccgttggtcgtgcgatcctgagc
ctgatcctgccgaaaggcatggaatacgcgctgatcgacgagccgaaggtgctgactgct
gcagagcaggctgacctggatgccaacccgcagaactggatcaaatccgtatccaacaag
gcgctgggcaaaaagctcatctcccgtctgctgaacacctgctatcgcaagcagggcctg
aaggacaccgtcatcttcgctgaccagctgatgtataccggtttccactacgcggccctg
tccggtgcttccgttggtatcgatgacatggtcatcccggatgccaagaaagacatcatc
gccgctgcagaagccgaagttgccgagatccaggaccagttcctgtccggtctggtaacc
gcaggcgaacgctacaacaaggttatcgatatctgggccagcgccaacgagcgcgtctcc
aaggccatgatggagaacttgtccaaagagcgtaacgtcaactcgctgggtgaagaagaa
gagcaagcctcgttcaacagcatcttcatgatggccgactctggtgcgcggggttccgca
gcccagatccgtcagcttgccggtatgcgtggcctgatggccaagccggatggctccatc
atcgagaccccgatcgtcgcgaacttccgcgaaggtctgaacgtactgcagtacttcatc
tccactcacggtgctcgtaagggtctggcggatacagcactgaagactgcgaactccggt
tacctgactcgtcgtctggttgacgtggcacaggacatggtgatcaccgaggacgattgc
ggcactaccgaaggtctgtggatgactccgctgatcgaaggtggcgacgtggtcgaaccg
ctgcgtgagcgcgtgctgggccgtgtggttgccgatgacgtcatcaagccgggtactgaa
gacgaagtgctggtagcacgcaacaccctgctcgacgagcagctgtgtgacctgctggag
cgcaactccgttgaccgcgtgaaggtacgttctgccatcacctgtgagaccgacttcggt
aactgtgctcactgctacggccgtgatctggcccgtggtcacctggttaacaagggtgag
gctgtcggtgttatcgccgcccagtccatcggtgaaccgggtacccagctgacgatgcgt
accttccacatcggtggtgccgcatcccgtgccgctgccgagagcagcatccaggtcaag
aacaccggtagcatcaagctgcagaacgccaagttcgttcacaacagtgacgacaaactg
gttatcacctcccgttctaccgaactgaccatcatggacgagatgggccgtaccaaggaa
agccacaagctgccttacggttctgtgctggaagtgaaagatggccaggccgtgaacgcc
ggtgaaaccgtcgccaactgggacccgcacactcacccgatcatcaccgaagtagcgggt
cgtctgcacttcgaacacatgatcgatggcgtgaccattactcgtcagaccgacgagctg
accggtctctcctccatcgtcgtgctggatgtcaacgagcgtccgagcgccggtaaagag
atgcgtccgaccgttaaactggtcgacctgaacggcaaggacgtgatgatcccgggtacc
gatgtagccgcccagtacttcctgccgggcaaggcaatcgtgaacctggaagatggtgcc
aacgtgggcgtgggtgacgcggtagcgcgtatcccgcaagagtccggcggtaccaaggac
atcaccggtggtctgccgcgcgttgcggatctgttcgaagcacgtcaaccgaaggaaccg
gcaattctggccgagatctccggtaccatctccttcgggaaagagaccaagggcaaacgc
cgtctggtcatcaccccgaccgatggtggcgatgtctacgaggagatgattccgaagtgg
cgtaacctgaacgtgttcgaaggtgaaaaagttgagaagggtgaagtgctggcggacggt
cctgagtctgctcacgacattctgcgtctgcgcggtatcagcccggtcgccaactacatc
gccaacgaagtgcaggacgtttaccgtctgcaaggcgttaagatcaacgacaagcacatc
gaagtcatcgtgcgtcagatgctgcgcaagtgcgagatcctgagcgctggcgacaccgac
ctgatcgaaggcgaacaggttgaagtggctcgcgttaagattgccaaccgtaagctggtt
gctgagggcaagaccccggccaccttccgtcacatcctgatgggtattaccaaggcatct
ctgagcaccgagtccttcatctccgcggcttccttccaggaaaccacccgtgttctgacc
gaagcagccgttggcggcaagcgtgatgaactgcgtggcctgaaagagaacgtgatcgtg
ggtcgtctgatcccggctggtaccggctttgcctaccaccacggccggatcaaccagcgt
gccgccgcagcccgtgctgttggcgtaccgcaggtgactgccgatgaagctcagcaaaac
ctggcggatctgctcaatgcagccggcagttttgacgaagagtaa
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integrated database retrieval system
