Aeromonas hydrophila AH10: VU14_06440
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Entry
VU14_06440 CDS
T03886
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ahi
Aeromonas hydrophila AH10
Brite
KEGG Orthology (KO) [BR:
ahi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahi03400
]
VU14_06440
DNA repair and recombination proteins [BR:
ahi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VU14_06440
Archaeal homologous recombinant proteins
VU14_06440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
nSTAND3
ABC_tran
ABC_ATPase
MMR_HSR1
DUF87
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKA16526
LinkDB
All DBs
Position
1377139..1380894
Genome browser
AA seq
1251 aa
AA seq
DB search
MKILSLSGENLASLTGQFTIDFAGGALGAAGLFAITGNTGAGKSTLLDAICLALYDEMPR
FIANRKNVAEVGRMDDEEKLKANDVRGILSRGHASGFAEVQFRGCDGRIWLARWAVRRAR
NRAEGRFQAQERSLTDVASGQVFSGSKRELQDRIDELVGLSWEQFRRAVILPQGEFAAFL
KSSADERSALLERMTGTELYSAISVQTHERAREEQQKLAAISQRLGDVALMDEATREQWV
SQQVSLATSLKHEQQQQQLMQDLRDLNGRIAAQLQACQEGEAALAAAEAAHGAAAPERGE
FTRAEQAQVARADHDELARLTLEVQQQEKALAELGPELGKLEEQTHQSSLTEQQLLAEKI
AAEREWGALQPELKRAQELDTRIREKQQQLQKIQQEGAQEREVQHTLEQGWRQQRQQVEQ
LKAQHQQWGAWLEEHKELAPVARQWQPLLTAMQDWAEDADRLQQLLTLREHKLRALTQLQ
HQLEQGQQERDYWQREQERLQQQQHELQEQQWEGRLAKAQEQWQGQTEQLGQLRQLLELA
DYGRNHGEQHGRLQQEIAQLEQALGKLAILGDELTPARERLALQRDEARHALEQSRAIAS
FEQHRHILRDGEPCPLCGAEEHPYHQSQPQVAGILGQLAERVRSLELEWERLNHQYIQCE
SERQELARQLAVRQQHLPELETRAEQLTQRWQQLGGAELLGHPLPLRQSPSEWNELMSTL
LGRGQSLEQGLARSQQQLREAQLGQQQLQAVRQQLSQLASQHQQFEQQWQEADRQRIALE
GEVKAMGEQETTLRQRLEQGGSRLDEQMGGQPWRQWLGSQQWHEWQRACEAWLHGQSEWE
RLTGEIASLTPALSAQEARLQTQRELLHKLERDYKEHEQQRQGLVTSRATCLGGEEIALV
ESRWQQRLQQLASELETMQGAARALRERQTELKTRLSHLEQEKQVSSRRRREVLGRWAAH
ASSLGIAEYDLRRLLAMSPDELKGRRAALQALEDARAEARTRLTERQRALALEESKRDRY
REHHPELAALAPPELDSRLTALEAHCRALDEQLFQCKSTLAQAEAAALKAGTLQEELAAQ
QAVADHWQRLSDLIGSASGAKLRTFAQSLTLERLLLEANAQLAELSPRYRLERVPGTDLA
LQVVDLDMGDEVRSVDSLSGGESFLVSLALALALSSLSSRQTQVESLFIDEGFGTLDPDS
LDLALSSLDSLQAAGRQIGVISHVQTLVERIGVQVRVEALGGGESRVVLPG
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctctctttgagtggtgagaacctcgccagcctgaccggtcaattcaccatc
gattttgccggtggcgccctgggggccgccggcctgtttgccatcaccggcaataccggc
gccggcaagagcaccctgctcgatgccatctgtctggcgctctacgacgagatgccgcgc
tttatcgccaatcgcaagaacgtcgccgaagtgggccgcatggacgacgaggagaagctc
aaggccaacgacgtgcgcggcatcctcagccgcggccacgccagcggtttcgccgaggtg
cagtttcgcggctgtgacggccgcatctggctggcccgctgggcggtgcgccgggcccgc
aaccgcgccgaggggcgctttcaggcccaggagcgcagcctgaccgacgtggcgtcgggc
caggtgttcagtggcagcaagcgggagctgcaggatcgcatcgacgagctggtggggctc
tcctgggagcagtttcgccgcgccgtcatcctgccgcagggggagtttgccgccttcctc
aaatcgagcgccgacgagcgttcggccctgctcgaacggatgaccggcaccgagctctac
tccgccatttcggtccagacccatgagcgggcgcgggaggagcagcagaaactcgccgcc
atcagccagcggctcggcgacgtggcgctgatggacgaggcgacccgcgaacagtgggtg
agccagcaggtgagccttgccaccagcctcaaacacgagcagcagcaacagcagctgatg
caggacttgcgcgatctcaacggccgcatcgccgcccagttgcaggcctgtcaggaggga
gaggcggcccttgccgcggccgaggcggcccacggtgcggccgcccccgagcggggggag
ttcacccgcgccgagcaggcccaggtggcccgcgccgatcacgacgagctggcccgtctc
accctggaggtgcagcagcaggagaaggcgctggccgagcttggtcccgaacttggcaag
ctggaggagcagacccatcagagctccctcaccgaacagcagttgctggcggagaagatc
gccgccgagcgcgagtggggcgccctgcagcctgaactcaaacgggcgcaggaactcgac
acccgcattcgggaaaagcagcagcagttgcagaagatccagcaggagggggcgcaggag
cgggaggtgcagcacaccctggaacagggctggcgccagcagcgccagcaggtggaacag
ctcaaggcccagcatcagcaatggggcgcctggcttgaggaacacaaggagctggcgccg
gtggcccgccagtggcagcccctgctcaccgccatgcaggattgggccgaggatgccgac
aggctgcagcagctgctcaccctgcgcgaacacaagctgcgcgccctcacgcaactgcaa
caccagctggagcaggggcagcaggagcgcgactactggcagcgcgagcaggagcggctg
cagcaacagcagcacgagctgcaggagcagcagtgggaggggcgtctggccaaggcgcag
gagcagtggcaagggcagaccgagcagctgggccagctgcgccagctgctggagctggcg
gactatggtcgcaatcacggcgagcagcatggtcgcctgcagcaggagatcgcccagctg
gagcaggcgctcggcaagctggccatcctcggcgacgagctgacgccggcccgcgagcgg
cttgccctgcagcgggacgaggcgcgccatgcactggaacaatcccgcgccatcgccagt
ttcgagcagcatcgccacatcctgcgcgatggcgaaccctgcccgctctgcggcgccgag
gagcacccctatcaccagagccagccacaggtggcgggcattctggggcagctggcggag
cgcgtccgcagcctggagctcgagtgggagcggctcaatcaccaatacattcagtgcgag
agcgagcgccaggagctggcccgccagctggcggtgcgccaacagcatctgcctgagctg
gagacgcgcgccgagcagctgacccagcgctggcagcaactgggcggtgccgaactgctg
ggccatccgctgccgctgcgtcagagcccaagcgagtggaacgaattgatgagtaccctg
cttggccgcggccagagcctggagcaggggctggcccgcagccagcagcagctgcgcgag
gcccagctcggccagcagcagttgcaggccgtgcgccagcagctgagccagctggccagc
cagcaccagcagttcgagcagcagtggcaggaggccgaccgccagcgcatcgccctggaa
ggggaggtgaaggcgatgggcgagcaggagacgaccctgcgccagcgccttgagcagggg
ggcagccggctcgacgagcagatgggaggccagccctggcgtcagtggctgggtagccag
cagtggcatgagtggcagcgggcctgcgaggcctggctgcacggtcagagcgagtgggag
cggctgaccggcgagattgccagcctcaccccggccctgagcgcccaggaggcgcgcctg
cagacccagcgcgagctgctgcacaagctcgagcgcgactacaaggagcatgaacaacaa
cggcaggggctggttaccagccgtgccacctgtctggggggcgaggagattgccctggtc
gagagccgctggcagcagcggctgcagcaactggccagcgagctggagacgatgcagggg
gcggcccgcgctttgcgcgagcgccagaccgagctcaagacccgtctcagccatctggag
caggagaagcaggtgagcagccggcggcggcgggaggtgctgggtcgctgggctgcccac
gccagcagcctcggcatcgccgaatatgacctgcgccgcttgctggccatgagcccggat
gagctcaaggggcgccgtgccgccttgcaggcgctggaggatgcccgcgccgaggcgcgt
actcgtttgaccgagcggcagcgggcactggcgctggaggagagcaagcgggatcgttac
cgcgagcatcacccggagctggccgcgttggcgccgccggaactcgacagccggctgacg
gcgttggaggcgcactgccgcgctctcgacgagcagctgttccagtgcaagagcacgctg
gcacaggccgaggcggctgccctcaaggcgggcaccttgcaggaggagctggctgcccag
caggcggtggcggatcactggcagcgcctctccgatctcatcggctcggccagcggcgcc
aagctgcgcaccttcgcccagagcctcacgctggagcggctgctactggaggccaacgcc
cagctcgccgagctctccccccgctatcggctggagcgggtgcccggcaccgatctggcg
ctgcaggtggtggatctcgatatgggagacgaggtgcgctcggtggactccctctccggc
ggtgagagcttcctggtgtcgctggcgctcgcgctggccctctccagcctgtcgtcgcgt
cagacccaggtcgaatcgctgttcatcgatgagggcttcggcaccctcgatcccgacagc
ctggatctggcgctctcaagcctggactccctgcaggcggccggccgccagatcggggtc
atctcccacgtgcagaccctggtggagcggatcggcgtgcaggtgcgggtggaggccctc
ggcggaggtgaaagtcgggtggtgttgcccggatga
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