Aeromonas hydrophila AH10: VU14_21650
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Entry
VU14_21650 CDS
T03886
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ahi
Aeromonas hydrophila AH10
Pathway
ahi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ahi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VU14_21650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahi03400
]
VU14_21650
Enzymes [BR:
ahi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
VU14_21650
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VU14_21650
DNA repair and recombination proteins [BR:
ahi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VU14_21650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Ribosomal_S13
NFACT_N
Zn_ribbon_9
Motif
Other DBs
NCBI-ProteinID:
AKA19344
LinkDB
All DBs
Position
complement(4808825..4809637)
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVEVSRQGISPWLTGIKVTRVVVRDGRLRWPVPGEIQELVDLTIHRVSRRAKYLL
LETDFGTAILHLGMSGSLRVLDIGTPAEKHDHVDIELANGKLLRLNDPRRFGALLWTREP
AEAHALLAKLGPEPLIDAFNADYLRERAKGRSTAIKTFLMDNHVVVGVGNIYANEALYAA
GIHPKRAAGNISAERLGTLVAEIKRVLAEAIRQGGTTLKDFTSVDGKPGYFVQQLQVYGR
GGQPCFHCHTLLSEIRLGQRTTVFCSHCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccggaagtcgaagtcagccgccagggtatctcgccctggcttaccggc
atcaaggtcacccgagtggtggtacgggacggccgtctgcgctggccggtgccgggggaa
atccaggagctggtggatctcaccatccaccgggtcagccgccgcgccaagtacctgctg
ctggagaccgacttcggcaccgccatcctccatctgggcatgtcgggcagcctgcgggtg
ctggacatcggcaccccggccgagaagcacgatcacgtggatatcgagctggctaacggc
aagctgctgcggctcaacgatccgcgccgcttcggcgccctgctgtggacccgcgagccg
gccgaggcgcacgcgctgctggccaagctggggccggagccgctcatcgacgcgttcaat
gccgattacctgcgtgaacgcgccaaggggcgcagcaccgccatcaagacctttctgatg
gacaaccatgtggtggtcggggtgggcaatatctacgccaacgaggcactctacgccgcc
ggcattcaccccaagcgggcggcgggcaacatcagcgccgagcgattgggcaccctggtg
gccgagatcaagcgggtgctggccgaagccatccggcagggcggcaccaccctcaaggat
ttcaccagcgtagacggcaagccgggctatttcgtgcagcagctgcaggtctacgggcgg
ggtggccagccctgttttcactgtcacaccctgctcagtgaaatccggctgggacagcgt
accaccgtgttctgctcccactgccagcgctga
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