Aeromonas hydrophila J-1: V469_00785
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Entry
V469_00785 CDS
T03574
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ahj
Aeromonas hydrophila J-1
Pathway
ahj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V469_00785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahj03019
]
V469_00785
03400 DNA repair and recombination proteins [BR:
ahj03400
]
V469_00785
Enzymes [BR:
ahj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V469_00785
Messenger RNA biogenesis [BR:
ahj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V469_00785
DNA repair and recombination proteins [BR:
ahj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
V469_00785
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AJE34546
LinkDB
All DBs
Position
171073..172908
Genome browser
AA seq
611 aa
AA seq
DB search
MTAIAETLPDPQPENPLALLQAVFGYQQFRPGQLEIIEQIVAGRDALVLKPTGGGKSLCY
QIPALLRPGLGVVVSPLISLMKDQVDSLRANGVAAVYINSALSREEMIQNFAAMRRGEIK
IVYVSPERLLQHEFMDRLAELPLGLFAIDEAHCVSQWGHDFRPEYAALGRLKQWFPQVPV
VALTATADEATRSDMLHRLELHDPFIHTASFDRPNIRYSLVEKFKAAEQLLRYVQSQKGN
CGIVYCSSRNRVEEVAERLSRHGCKAAPYHAGLPLELRQRTQESFLKDDIEIVVATVAFG
MGIDKPNVRFVVHYDIPKNIESYYQETGRAGRDGTPAEALLLYDPADIGRVRRLLDNIEN
PQQLQVEQYKLNVMAAFAEAQTCRRQVLLNYFGEYNDKPCGNCDICLDPPQSYDGTEDAQ
KALSCVWRVGQNFGVGYVVEVLRGSLNQRIKDHGHDKLSTYGIGKDQSHEYWMSVIRQLI
HKGLLTQNITRNLVLQLTEAARPVLRGEVKLDLAVPRLQPISSRKEKRNGLLDNANYDKR
LFKELRALRKQIAEDEEVPPYVVFNDATLVEMAQLMPMTEAEMLAVNGVGHRKLERFGEA
FMDLIIDYCRR
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccattgccgaaaccctgcctgacccccagccagagaatccgcttgccctgttg
caggcggtgttcggctatcagcaattccggccgggccagctcgaaatcatcgagcagatc
gtggcggggcgcgatgcgctggtgctcaaacccaccggtggcggcaagtcgctctgctac
cagatccctgcgttgctgcgccctgggctcggggtagtggtctctcccctcatttcgctg
atgaaggatcaggtggacagcctgcgcgccaacggcgtggcagcggtctacatcaattcg
gcccttagccgggaggagatgatccagaattttgccgccatgcggcgcggcgagataaaa
atcgtctatgtctcccccgaacgcctgttgcagcacgagtttatggatcggctggcggag
ctgccgctcggcctgtttgccatcgacgaggcgcactgcgtctcccagtgggggcacgat
tttcggccggaatatgcggcgctgggccggctcaagcagtggttcccgcaggtgcccgtg
gtggcgctcaccgccaccgccgacgaggcgacccgcagcgacatgctgcatcggctggaa
cttcacgaccccttcatccacaccgccagctttgacagacccaatatccgctacagcctg
gtggagaagttcaaggcggcggagcagctgctgcgctacgtgcagagccagaagggcaac
tgcggcatcgtctactgctccagccgcaatcgggtggaggaggtggccgagcggctctcc
cgccacggctgcaaggcggcgccctatcatgccggtttgccgctcgagctgcgccagcgc
acgcaggaatccttcctcaaggacgacatcgagatagtggtggcgacggtggcgttcggc
atgggcatcgacaagcccaacgtgcgcttcgtggtgcactacgacatccccaagaacatc
gagtcctactatcaggagaccggccgggctggccgtgacggtactccggccgaggcgctg
ctgctgtacgatcccgccgacatcggtcgggtgcgccggctgctcgacaacatcgaaaac
ccccagcagttgcaggtggagcagtacaagctcaacgtgatggcggccttcgccgaggcg
cagacctgccggcgccaggtgctgctcaactacttcggcgagtacaacgacaagccgtgc
ggcaactgcgacatctgcctcgatccgccccagagctatgacggcaccgaagatgcccag
aaggcgctctcctgcgtctggcgggtggggcagaatttcggggtgggttatgtggtggag
gtgctgcgcgggtcgctgaaccagcgcatcaaggatcacggccacgacaagctgtcgacc
tacggcatcggcaaggatcagagccacgagtactggatgagcgtgatccgccagctgatc
cacaaggggctgctgacccagaacatcacccgcaatctggtgctgcagttgaccgaggcg
gcccgtcccgtgctgcgcggcgaggtgaagctggatctggcggtgccgcgcctgcagcct
atctccagccgcaaggagaagcgcaacggcctgctcgacaacgccaactacgacaagcgg
ctgttcaaggagctgcgcgccctgcgcaagcagatcgccgaggatgaagaggtgccgccc
tacgtggtgttcaacgacgccaccctggtcgagatggcgcaactgatgccgatgaccgag
gcggaaatgctggcggtcaacggcgtgggtcaccgcaagctggaacgcttcggcgaagcc
tttatggacctgatcatcgactactgccgtcggtag
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