Aeromonas hydrophila J-1: V469_05960
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Entry
V469_05960 CDS
T03574
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ahj
Aeromonas hydrophila J-1
Brite
KEGG Orthology (KO) [BR:
ahj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahj03032
]
V469_05960
03400 DNA repair and recombination proteins [BR:
ahj03400
]
V469_05960
Enzymes [BR:
ahj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
V469_05960
DNA replication proteins [BR:
ahj03032
]
Prokaryotic type
DNA Topoisomerases
V469_05960
DNA repair and recombination proteins [BR:
ahj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
V469_05960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AJE35476
LinkDB
All DBs
Position
1251292..1253913
Genome browser
AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDYVVKSSVGHVRDLPTSGSASNEPKKPVIRGIKLSEA
EKAAKDRNALFSRMGINPTAGWQANYQILPGKEKVVSELQSLAEKADTIYLATDLDREGE
AIAWHLREIIGGDDSRYKRVVFNEITKTAIQEAFAQPSELNIHRVNAQQARRFLDRVVGY
MVSPLLWKKLARGLSAGRVQSVAVRLIVDKEREIKAFVPVEFWDLNADLLTADKSDLRME
VVSRNGADFKPVTQAETFAAVAALEGVDYKVVNREDKPTGSKPSAPFITSTLQQAASTRL
SFGVKKTMMMAQRLYEAGYITYMRTDSTNLSKEAVEAVREYIGEQYGAAYLPSDPNLYGA
KANAQEAHEAIRPSSVLVTAEMLEGMELDAMRLYDLIWRQFVACQMTPAQYDSSTLTVKA
GEFELKARGRTLRFAGWTKALPPMGRKGEDSQLPAVTVGEILKLVKLDPRQHFTKPPARF
TEAALVRELEKRGIGRPSTYASIISTIVDRGYVRVESRRFFAEKMGEIVTDRLVENFVEL
MNYEFTAKMEDKLDGIAEGSLEWKKVLDAFYAEFTQELEKADKAPEEGGMRANQMVLTDI
DCPDCGRKMGIRTATTGVFLGCSGYALPPKERCKKTINLVSADEFVSATDGEEAETEALR
AKHRCTICGTAMDAYIIDDSRKLHVCGRNPDCDGYEIEKGQFKLKGYEGPSIECDRCGSE
MQLKNGRFGKYMGCTNDTCKNTRKILKNGDIAPPKEDPVPLPELKCTQSDAHFVLRDGAA
GLFLAASNFPKSRETRAPLVEELKRFKERLSPKHQYLADAPASDPDGNAAIVRFSRKTKE
QYVMTEVNGKATGWTAHYDNGKWQESLAKSKKA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcactggtcatagtggagtctccggccaaggccaagaccatcaacaaatat
ttgggcaaggactacgtggtgaaatccagcgtcggtcacgtgcgcgatctgcccaccagc
ggcagcgccagcaacgagcccaaaaaacctgtcattcgcggcatcaagctgagcgaagca
gagaaggctgccaaggatcgcaatgccctgttctcacggatggggatcaatccgaccgca
ggctggcaggccaactaccagattttgcccggcaaggaaaaagtggtcagcgagttgcag
agtctggccgagaaggccgacaccatctatctcgcaaccgacttggatagagagggagag
gcgatcgcctggcacctgcgcgagatcatcggcggcgacgacagccgctacaagcgcgtg
gtgttcaacgagatcaccaagaccgccatccaggaggcgtttgcccagccatccgagctg
aacattcaccgcgtcaatgcccagcaggcccgtcgtttcctcgaccgcgtggtgggttac
atggtctccccgctgctctggaagaagctggcccgcggcctctctgccggccgggtacag
tcggtcgcggtgcgtctcatcgtcgataaagagcgcgagatcaaggcgttcgtgccggtc
gagttctgggatctcaacgccgatctgctgaccgccgacaagagcgatctgcggatggaa
gtggtcagccgcaacggcgccgacttcaagccggtgacccaggccgagaccttcgccgcc
gtggccgccctggaaggggtcgactacaaggtggtgaaccgggaagacaagccgaccggc
tccaagccgtccgcccccttcatcacttctaccctgcagcaggcagcctctacccggctg
agcttcggggtcaagaagaccatgatgatggcccagcgtctctatgaagcgggttacatc
acctatatgcgtaccgactccaccaacctcagcaaagaggcggtcgaggcggtgcgggaa
tacatcggcgagcagtatggcgccgcctacctgccgagcgatccgaacctgtacggtgcc
aaggccaatgcccaggaggcccacgaggcgatccgcccctccagcgtgctggtgaccgcc
gagatgctggaagggatggagctggacgccatgcggctttatgacctcatctggcgtcag
tttgtcgcctgtcagatgacgccggcccagtacgactcctccaccctgaccgtcaaggcg
ggtgagtttgaactcaaggcgcgcggtcgtaccctgcgcttcgccggttggaccaaggcg
ctgccgccgatgggccgcaagggcgaagacagccagttgccggcggtgaccgtcggcgag
atcctcaaactcgtcaagctggatccgcgccagcacttcaccaagccgcccgcccgcttc
accgaagcggcgctggttcgcgagctggagaagcgcggcatcggccgtccgtctacctac
gcctccatcatctccaccatcgtcgaccgtggttatgtgcgggtcgagagccgccgtttc
ttcgccgagaagatgggtgagattgtcaccgaccggctggtcgagaacttcgtcgagctg
atgaactacgagttcaccgccaagatggaagacaagctcgacggcattgccgaagggagc
ctggagtggaagaaggtgctggacgccttctacgccgagttcacccaggagctggagaaa
gcggacaaggcgccggaagagggaggcatgcgtgccaaccagatggtgctgaccgacatc
gactgcccggattgcggccgcaagatgggcatccgtaccgccaccaccggggtgttcctc
ggctgttccggctacgccttgccgcccaaagagcgctgcaagaagaccatcaacctggtc
tccgccgacgagttcgtctccgccaccgacggtgaagaggccgaaaccgaggcgctgcgt
gccaagcaccgctgcaccatttgcggcaccgccatggatgcctacatcatcgacgacagc
cgcaagctgcacgtctgtggtcgcaacccggattgcgatggctacgaaatcgaaaaaggc
cagttcaagctcaagggttacgaagggccgagcatcgagtgtgaccgttgcggatccgag
atgcagctcaagaacggccgcttcggcaagtacatgggttgcaccaacgatacctgcaag
aacacccgcaagatcctgaaaaacggtgacatcgcgccgccgaaggaagacccggtcccg
ctgccggagctcaagtgcacccagtccgacgcccacttcgtgctgcgtgacggggcggcc
ggcctgttcctggccgccagcaacttcccgaaatcccgcgagacccgtgcgccgctggtg
gaagagctcaagcgcttcaaggagcgtctgtcgcccaagcaccagtatctggccgatgcc
ccggcgtcagatcctgacggaaacgccgccatcgtgcgcttcagtcgcaagaccaaggag
cagtacgtgatgaccgaggtgaacggcaaggcgaccggctggacggcgcactacgacaac
ggcaagtggcaggagagcctggccaagtcgaagaaggcgtga
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