Aeromonas hydrophila J-1: V469_06280
Help
Entry
V469_06280 CDS
T03574
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ahj
Aeromonas hydrophila J-1
Brite
KEGG Orthology (KO) [BR:
ahj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahj03400
]
V469_06280
DNA repair and recombination proteins [BR:
ahj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
V469_06280
Archaeal homologous recombinant proteins
V469_06280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
nSTAND3
Jnk-SapK_ap_N
ABC_tran
ABC_ATPase
AAA_21
MMR_HSR1
Hormone_1
DUF87
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJE35533
LinkDB
All DBs
Position
1323334..1327086
Genome browser
AA seq
1250 aa
AA seq
DB search
MKILSLSGENLASLTGQFTIDFAGGALGAAGLFAITGNTGAGKSTLLDAICLALYDEMPR
FIANRKNVAEVGRMDDEEKLKANDVRGILSRGHASGFAEVQFRGCDGRIWLARWAVRRAR
NRAEGRFQAQERSLTDVVSGQVFSGSKRELQDRIDELVGLSWEQFRRAVILPQGEFAAFL
KSSADERSALLERMTGTELYSAISVQTHERAREEQQKLAAISQRLGDVALMDEATREQWV
SQQVSLATSLKHEQQQQQLMQDLRDLNGRIAAQLQACQEGEAALAAAEAAHAAAAPEREE
FARAEQAQVARADHDELARLTLEVQQQEKALAELGPELGKLEEQTQQSALTEQQLLAEKI
AAEREWGALQPELKRAQELDTRIREKQQQLQKIQQEGAQEREVQLTLEQGWRQQRQQVEQ
LKAQHLQWGAWLEEHKELAPVARQWQPLLTAMQDWAEDADRLQQLLTLREHKLRTLRQLQ
HQLEQGQQERDYWQREQERLQQQQHELQEQQWEGRLAKAQEQWQGQTEQLGQLRQLLELA
DYGRNHGEQHGRLQQEIGQLEQALGKLAILGDELTPARERLALQRDEARHALEQSRAIAS
FEQHRHILRDGEPCPLCGAEEHPYHQSQPQVAGILGQLAERVRSLELEWERLNHQYIQCE
SERQELARQLAVRQQHLPELETRAEQLTQRWQQLGGAELLGHPLPLRQSPIEWNELMSIL
LGRGQSLEQGLARSQQQLREAQLGQQQLQAVRQQLSQLASQHQQFEQQWQEADRQRIALE
GEVKAMGEQETTLRQRLEQGGSRLDEQMGGQPWRQWLGSQQWREWQRACEAWLHGQSEWE
RLTGEIASLTPALSAQEARLQTQRELLHKLERNYKEHEQQRQGLVTSRATCLGGEEIALV
ESRWQQRLQQLASELETMQGAARALRERQTELKTRLSHLEQEKQVSSRRRREVLGRWAAH
ASSLGIAEYDLRRLLAMSPDELKARRAALQALEDARAEARTRLTERQRALALEESKRDRY
REHHPELAALAPQELDSRLTALEAHCRTLDEQLFQCKSTLAQAEAAALKAGTLQEALAAQ
QAVADHWQRLCDLIGSASGAKLRTFAQSLTLERLLLEANAQLAELSPRYRLERVPGTDLA
LQVVDLDMGDEVRSVDSLSGGESFLVSLALALALSSLSSRQTQVESLFIDEGFGTLDPDS
LDLALSSLDSLQAAGRQIGVISHVQTLVERIGVQVRVEALGGGESRVVLP
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctctctttgagtggtgagaaccttgccagcctgaccggtcaattcaccatc
gattttgccggtggcgccctgggggccgccggcctgtttgccatcaccggcaataccggc
gccggcaagagcaccctgctcgatgccatctgtctggcgctctacgacgagatgccgcgc
tttatcgccaatcgcaagaatgtcgccgaagtgggccgcatggacgacgaggagaagctc
aaggccaacgacgtgcgcggcatcctcagccgcggccatgccagcggtttcgccgaggtg
cagtttcgcggttgtgacggccgcatctggctggcccgctgggcggtgcgccgggcccgc
aaccgcgccgaggggcgctttcaggcccaggagcgcagcctgaccgacgtggtgtcgggt
caggtgttcagtggcagcaagcgggagctgcaggatcgcatcgacgagctggtagggctc
tcctgggagcagtttcgccgcgccgtcatcctgccgcagggggagtttgccgccttcctc
aagtcgagcgccgacgagcgttcggccctgctcgaacggatgaccggcaccgagctttac
tccgccatttcggtccagacccatgagcgggcgcgggaggagcagcagaaactcgccgcc
atcagccagcggctcggcgacgtggcgctgatggacgaggcgacccgcgagcagtgggtg
agccagcaggtcagcctcgccaccagcctcaaacacgagcagcagcaacagcagctgatg
caggacttgcgcgatctcaacggccgcatcgccgcccagttgcaggcctgtcaggaggga
gaggcggcccttgccgcggccgaagcagcccacgctgcggccgctcccgagcgcgaggag
ttcgcccgcgccgagcaggctcaggtggcccgcgccgatcacgacgagctggctcgcctc
accctggaggtgcagcagcaggagaaggcgctggccgagcttggtcccgaacttggcaag
ctggaggagcagactcagcagagcgccctcaccgagcagcagctgctggcggagaagatc
gccgccgagcgcgagtggggcgccctgcagcccgagctcaaacgggcgcaggagctcgac
acccggattcgagaaaagcagcagcaactgcagaagatccagcaggagggggcgcaggag
cgggaggtgcagctcaccctggaacagggctggcgccagcagcgccagcaggtggagcag
ctcaaggcccagcacctgcagtggggcgcctggcttgaggagcacaaggagctggcgccg
gtggcccgccagtggcagcccctgctcaccgccatgcaggattgggccgaggatgccgac
aggctgcagcagttgctcaccctgcgcgaacacaagctgcgcaccctcaggcaactgcaa
caccagctggagcaggggcagcaggagcgcgactactggcagcgcgagcaggagcggctg
cagcagcaacagcacgagctgcaggagcagcagtgggaggggcgtctggccaaggcgcag
gagcagtggcaagggcagaccgagcagttgggccagctgcgccagctgctggagctggcg
gactatggccgcaatcacggtgagcagcatggtcgcctgcagcaggagatcggccagctg
gagcaggcgctcggcaagctggccatcctcggcgacgagctgacgccggcccgcgagcgg
ctcgccctgcaacgggacgaggcgcgccacgcgctggagcagtcccgcgccatcgccagt
ttcgagcagcatcgccacatcttgcgcgacggtgaaccttgcccgctctgcggcgccgag
gagcacccctatcaccagagccagccacaggtggcgggtattctggggcagctggcggaa
cgcgtccgcagcttggagctcgagtgggagcggctcaatcaccaatacattcagtgcgag
agcgagcgccaggagctggcccgccagctggcggtgcgtcagcaacatctgcctgagctg
gagacgcgcgccgagcagctgacccagcgctggcaacagctcggcggtgccgagctgctg
ggacatccgttgccgttacgtcagagcccgatcgagtggaacgaattgatgagcatcctg
ctgggccgcggccagagcctggagcaggggctggcccgcagccagcagcaactgcgcgag
gcccagctcggccagcagcagttgcaggccgtgcgccagcagctgagccagctggccagc
cagcaccagcagttcgagcagcagtggcaggaggccgaccgccagcgcatcgccctggaa
ggggaggtgaaggcgatgggcgagcaggaaacgaccctgcgccagcgccttgagcagggg
ggcagccggctcgacgagcagatggggggccagccctggcgtcagtggctgggcagccag
cagtggcgcgagtggcagcgggcctgcgaggcctggctgcacggtcagagcgagtgggag
cggctgaccggcgagattgccagcctcaccccggccctgagcgcccaggaggcgcgtctg
cagacccagcgcgagctgctgcacaagctcgagcgcaactacaaggagcatgaacagcaa
cggcaggggctggtcaccagccgcgccacctgtctggggggggaggagattgccctggtc
gagagccgctggcagcagcggctgcagcagctggccagcgagctggagacgatgcagggg
gcggcccgcgccctgcgcgagcgccagaccgagctcaagacccgcctcagccatctggag
caggagaagcaggtgagcagccggcggcggcgggaggtgctggggcgctgggctgcccac
gccagcagcctcggcatcgcagaatacgacctgcgtcgcctgctggccatgagcccggat
gagctcaaggcgcgccgcgccgccttgcaggcgctggaggatgcccgcgccgaggcacga
acccgcttgaccgagcggcagcgggcgctggcgttggaggagagcaagcgggatcgttac
cgcgagcatcaccccgagctggccgcgttggcgccacaggagctcgacagccggctgacg
gcgctggaggcgcactgccgcaccctcgacgagcagctgttccagtgcaagagcaccctg
gcccaggccgaggcggctgccctcaaggcgggcaccttgcaggaggcgctggccgcccag
caggcggtggcggatcactggcagcggctctgtgatctcatcggctcggccagcggcgcc
aagctgcgtaccttcgcccagagcctcacgttggagcggctgctgctggaggccaacgcc
cagctcgccgagctctccccccgctatcggctggagcgagtgcccggcaccgatctggcg
ctgcaggtggtggatctcgacatgggggacgaggtgcgctcggtggattccctctccggt
ggcgagagcttcctggtgtcgctggcgctggcgctggctctctccagcctgtcgtcgcgc
cagacccaggtcgaatcgctgtttatcgatgaaggcttcggcacgctcgatcccgacagc
ctggatctggcgctctcaagccttgactccctgcaggcggccggtcgccagatcggggtc
atctcccacgtgcagaccctggtggagcggatcggcgtgcaggtgcgggtggaggccctc
ggcggcggcgaaagccgggtggtactgccctga
DBGET
integrated database retrieval system