Aeromonas hydrophila J-1: V469_11315
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Entry
V469_11315 CDS
T03574
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ahj
Aeromonas hydrophila J-1
Pathway
ahj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V469_11315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahj03019
]
V469_11315
03009 Ribosome biogenesis [BR:
ahj03009
]
V469_11315
Enzymes [BR:
ahj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
V469_11315
Messenger RNA biogenesis [BR:
ahj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V469_11315
Ribosome biogenesis [BR:
ahj03009
]
Prokaryotic type
rRNA processing factors
V469_11315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AJE36392
LinkDB
All DBs
Position
complement(2472987..2476118)
Genome browser
AA seq
1043 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSGLTVPDGMGLIVRTAGVGKSPEEL
EWDLNVLLNHWDSIHKASQSRSAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERA
KAHIELVRPDFLNRVKLYKGEVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RLREAVHQDRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLAL
SILRLIEEEAMKDNTEQVHGQVPVDVAAYLLNEKRASIASLEQRNDVRVYIIPNQHLETP
HYEVTRIRQNEIPEAASYELKTEIAKPVYQPKQAQVIEREQPLLQGFVQAPQPAPAAPAP
VVAPAALAAPEAGLFGKLFKAISGLFGSDTAPADVKAPADKPAAQREARKDEGHRHQRDE
TRSRGQRGRRDDNRGNRSPADTAEKREAGANREGGESRNRRPRKEREPRQEREARGEVRE
QRMEREPREAREPRQEREPRAPRPAREPRAPREPRAEVVVEAVETVDTIMVNDEPRLEKE
QKVAERRERRQLRKQIRVDAPASDVAALPADAPVVAEEASDAVEQHDEQAEGQRRSRRTP
RNQRIEGQRRKRINEDARSQREDEEQSAEGTAPTLTAAAQADAAQVKVEEPAVPVITIPS
AEAVAAALQASAALTEHVVPEAVVAEAHEQAEVVAAEPVVTEAVVAEEAQVAVVNEPVVA
EVAAPVIAEAVAVEAPAIETAVVEAAPAAPAVEEAAPAVVVAEVAPLVVEQPAPVAEPVI
ADEAPVAAAVVAPVTKQVKRGGGLLAGARKASAPMATPAAAPALPVREPVDHAPLVRSEV
ASSGRHGGSTAAVNVATSPAGRP
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcgactcaggaagaagagttgcgcgtagcgctggttgac
ggacaacagctctacgatctggatattgaaagtccgggacacgagcagaaaaaagcgaac
atttacaagggcaaaatcacccgcgtagaacccagtcttgaagctgcttttgtcgactat
ggcgccgagcgccacggtttcctgccgttaaaggaaatcgcccgcaattacttcccctcc
ggttactcctatcagggtcgtcccaacatcaaagaagtggtccgcgaaggccaggaagtg
atcgtccagatcgacaaggaagagcgtggcaccaagggtgcagccctcaccacctttatc
agtctggccggcagctacctggtactgatgccgaacaatcctcgcgccggtggtatctcc
cgccgtatcgaaggtgatgaacggactgaactgaaagaagccctgagcggcctgaccgtg
ccggacggcatgggcctcatcgtgcgtactgccggtgtgggcaaatccccggaagagctg
gaatgggatctgaacgttctgctcaaccactgggattccatccacaaggcgtcacagagc
cgctccgcgccggtgctgatccatcaggaaagcaacgtcatcgtgcgtgccatccgtgac
tatctgcgtcgcgatgtcggcgagatcctgatcgacaacccggtcatcttcgagcgtgcc
aaggcgcatatcgagctggttcgtcccgatttcctcaatcgagtgaagctgtacaagggt
gaagttgccctgttcaaccacttccagatcgagagccagatcgagtctgccttccagcgt
gaagtgcgtctgccttccggcggcagcatcgtcatcgatccgaccgaagcgttgacctcc
atcgatatcaactcctcccgcgccaccaagggcggcgatatcgaagagacggcgctgcaa
accaacctggaagcggccgacgaaattgcccgtcaattgcgcctgcgcgacctgggtggc
ctgatcgtcatcgacttcatcgacatgaccccggttcgtcatcagcgcgaagtggaaaac
cgtctgcgtgaagcggtgcatcaggatcgtgcccgcatccagctgggccggatctcccgt
ttcggtctgctggagatgtctcgccaacgtctgcgtccctccctcaacgagtccagcagc
catatctgccctcgttgccagggccagggagtgatccgtgacaacgaatcactggccttg
tccatcctgcgtctcatcgaagaagaggccatgaaggacaacaccgagcaggttcacggc
caagtgccggtcgatgttgccgcctatctgctcaacgagaagcgtgcctccatcgccagc
ctggaacagcgcaatgatgtgcgtgtctacatcattccgaaccagcatctggaaaccccg
cactacgaagtgacccgcatccgccagaacgagatcccggaagcggccagctacgagctg
aaaaccgagattgccaagccggtctaccagccgaagcaggctcaggtgatcgagcgcgaa
caaccgctgctgcaaggttttgtccaggcgccccagccggctcccgccgcgccggccccg
gtcgtggctcccgctgcactggccgcgcccgaagccggtctgtttggcaagctgttcaag
gccatctccggcttgttcggttccgacaccgcccctgccgacgtgaaggctcctgccgac
aaaccggcagcccagcgcgaagcacgcaaggatgagggtcatcgtcatcaacgcgatgaa
acccgcagccgtggtcagcgtggtcgtcgtgatgacaaccgtggtaaccgcagccctgcc
gatactgcagagaagcgggaagcgggtgccaaccgtgaaggcggtgaaagccgcaaccgt
cgtccccgcaaagagcgcgagccacgccaggagcgtgaagcccgtggcgaagtgcgtgaa
cagcgcatggaacgtgaacctcgcgaggctcgtgagccgcgtcaggaacgcgaaccccgc
gcaccgcgcccggctcgtgaaccccgtgctccgcgtgaacctcgcgccgaagtggtcgtt
gaagcggtagaaaccgtcgataccatcatggtcaacgacgagccgcgtctggaaaaagag
cagaaagtggctgagcgccgcgaacgccgtcaactgcgcaagcagatccgggtcgatgcc
ccggccagcgacgttgccgccctgcctgccgatgctccggttgttgccgaagaagcctcc
gacgcagtagagcagcacgatgagcaggccgaaggccagcgtcgttcccgccgtacgccg
cgcaatcagcgtatcgaaggccagcgtcgcaagcgcatcaatgaagatgcccgcagccag
cgtgaagatgaagagcagtctgccgaaggcactgcccctaccctgactgcagctgcccag
gcagatgccgctcaggtgaaagtggaagagccggcagtccctgtcatcaccatccccagt
gctgaagcggttgccgccgccctgcaggcctctgctgcgctgaccgagcatgtcgtgcct
gaagccgttgtggccgaggctcacgagcaggctgaagtcgtggccgcagagccagtggta
accgaagcggtagttgctgaagaagcccaggtagcggttgtcaacgagccagtggttgca
gaagttgctgctccggtcattgcggaagccgttgcggtcgaggctccggccatcgaaact
gccgtggttgaagcggcacctgctgctccagcagttgaagaagcggctccggcagtggtt
gtagccgaggttgcccctctggtggttgaacagccagctccggtcgctgagcctgtcatc
gctgacgaggctccggtagctgctgccgtagtagcccctgtgaccaagcaagtcaaacgt
ggtggtggcctgctggccggtgcccgtaaggcctctgcgccgatggcaacaccggcagct
gcccctgccctgccggtacgtgagccggttgatcatgcgccgctggtgcgtagcgaagtg
gcaagctccggtcgccatggcggcagtaccgcagcggtcaacgttgcaaccagcccggcc
ggtcgtccttga
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