Aeromonas hydrophila J-1: V469_12325
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Entry
V469_12325 CDS
T03574
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ahj
Aeromonas hydrophila J-1
Pathway
ahj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V469_12325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahj03019
]
V469_12325
03400 DNA repair and recombination proteins [BR:
ahj03400
]
V469_12325
Enzymes [BR:
ahj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V469_12325
Messenger RNA biogenesis [BR:
ahj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V469_12325
DNA repair and recombination proteins [BR:
ahj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
V469_12325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
TniB
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJE36575
LinkDB
All DBs
Position
2688641..2690569
Genome browser
AA seq
642 aa
AA seq
DB search
MISSLLTRHFGFDRLRPGQEAVISRLLAGQSAAAIFPTGSGKSLCYQLPALALPHLTLVI
SPLIALMHDQLAFLRSKGIAAATLDSSLTPEESRRVMQQASDGQLKILMISVERLKNERF
RRFIQQVPLSMLVVDEAHCISEWGHNFRPDYLKLPDYRRELQIPQVLLLTATATPAVMAD
MQAKFEIEDEGLIVTGFYRANLDLAVVPLPDEARDDWLHAELARDPVAPTIIYVTLQHTA
EQCAARLQQAGIRARAYHAGLDATLRSQIQHDFMAGKLDCIVATIAFGMGIDKADIRRVI
HYDLPKSIENYSQEIGRAGRDGLPSRCMVLANRSQLPVLENFVYGDTPDRTAIVTLLEIL
QQSGSEWEFGLLRLSNDTNIRQLPLKTLLVYLEMAGIIAPAYSYFAEYRFKFVLDKADIL
ARFNPARRQFLEQVFASAPQARSWCTMDFEALWQGYQGERSRAAAALDYLQQQGWIELES
KQMTEVYRVLQQDLDIAPLADQLHGLFEKKEQSELARLQALLGFFTSSSCLSHELARYFA
DQAAPTHCGHCSVCRGEVAQLPSLPSRTLPNEQGLRAWCDPLVALCHSRDPRILTRFLCG
ITTPLTTRLKARSLAGFGQLASHPFADVLAAVSNIYAARQQG
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgatctcatccctgttgacccgtcacttcggcttcgatcggttaagaccgggacaggag
gcggtgatcagccgattactggccggccagagtgccgccgccatcttccccaccggctcc
ggcaagtccctctgttatcagttgccggcgcttgccctgccccatctgaccctggtgatc
tcgccgctgatcgcgctgatgcatgatcagctcgccttccttcgcagcaaggggatcgcc
gccgccaccctcgactcgagcctgacgccggaagagagccgccgggtgatgcagcaggcc
agcgatggccagctcaagatcctgatgatctcggtggagcggctcaagaacgaacgcttt
cgccgtttcatccagcaggtgccgctgtcgatgctggtggtggacgaggcccactgcatt
tctgagtggggccacaactttcgccccgactatctcaagctgccggattaccgccgtgaa
ttgcagatcccgcaggtgttgctgctgacggccaccgccaccccggcggtcatggccgac
atgcaggccaaattcgagatcgaggatgaggggctcatcgtcaccggcttttatcgcgcc
aacctggacttggccgtggtgccgctgcctgacgaggctcgcgatgactggctgcatgcc
gagctggctcgtgaccccgtcgcgccgaccatcatctatgtcaccctgcagcacaccgca
gagcagtgcgcagcccgcttgcaacaagccgggatcagagcgcgcgcctatcacgccggg
ctcgatgccaccctgcgcagccagatccagcacgacttcatggccggcaagctggactgc
atcgtggcgaccatcgccttcggcatggggatcgacaaggccgatattcgccgggtgatc
cattacgatctgcccaaatccatcgaaaactacagtcaggagataggccgtgccggccgg
gatggtctgccttcccgctgcatggtactggccaatcgcagccagttgccggtactggaa
aacttcgtctatggcgacaccccggacagaacggccatcgtcaccttgctagagatcctg
cagcaaagcggcagtgagtgggaatttggcttgctgcgcctctccaacgacaccaatatc
cgccaactgccgctcaagaccctgttggtctacctggagatggcgggcatcatagcgccg
gcctacagctattttgccgagtatcgcttcaagttcgtgctggacaaggccgacatcctg
gcccgttttaatccggcgcgacgtcagtttctggagcaagtgttcgccagtgccccgcag
gcgcgcagctggtgcaccatggacttcgaggcgctctggcagggttatcagggggagcgg
tcgcgggccgctgccgcgctggattacctgcagcagcaaggctggatcgagctggagagc
aagcagatgaccgaggtctatcgggtgctgcaacaagatctggacatagcaccgctggcc
gatcagctgcacggactgtttgaaaagaaagagcaaagcgagctggcgcgtctgcaggca
ttgctgggtttctttacttccagcagttgcctgagccatgagctggcccgctactttgcc
gatcaggccgcgcccacccattgcgggcactgctcggtctgtcggggagaggtggcgcag
cttccctccttacccagccggacactccctaatgagcaggggctcagagcctggtgcgat
ccgctggtagccctgtgtcatagccgggatccccgcattctgacgcgtttcctgtgcggc
atcaccactccgctcaccacccggctcaaggccagaagcctggctggattcggccagctg
gcgtcccacccctttgccgatgtgctggcagccgtatccaacatttatgccgctcgccaa
cagggataa
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