Aeromonas hydrophila J-1: V469_17415
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Entry
V469_17415 CDS
T03574
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ahj
Aeromonas hydrophila J-1
Pathway
ahj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V469_17415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahj03019
]
V469_17415
03400 DNA repair and recombination proteins [BR:
ahj03400
]
V469_17415
Enzymes [BR:
ahj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V469_17415
Messenger RNA biogenesis [BR:
ahj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V469_17415
DNA repair and recombination proteins [BR:
ahj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
V469_17415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
AJE37541
LinkDB
All DBs
Position
complement(3817392..3819872)
Genome browser
AA seq
826 aa
AA seq
DB search
MEEQWSRLQQALATCFNDDVTFKDGIENPFLLRLMNIVTDASAKTSDIFAGYVDALRTAQ
ANGIDNPWLPSPPSLTELPDPRWGLEKNVVGQTLSLSVEVDLTSTKATYQLRTRRNLLQP
EIDPALKNLLVDTPHTHYRGFGQQAAIRTLLTSDINSTLVVNLPTSCGKSLITQVQAISA
PFGSLTLVIVPTVALAIEQADFMRDMLRQAEQDHGGNYAWVGGQDQTTRQTLKERLKNGS
QRVLFCSPEAAKSSLVPVLFELAKNNLISAVVIDEAHLIDQWGAEFRPDFQLIAPLIRSL
KAQSGCRFRTLLLSATWNQSTRDVIVEQFRADDSELIEITANFLRPEPEYFIHAEPNPEA
HQQRVERLLMTLPRPLILYCTTQEEAENWHRRLQVQNYQRVGLFHGDTEVLDRKKLISQW
ASDQLDIMIATSAFGVGMNKSNVRTVIHAAIPENIDRYYQECGRAGRDGKACQAHLVWHS
EQMETAESLSVEKLISVEKGFLRWKAMFEQRQPSDIASYCISLDTKPDHVDYQGNRNQAW
NRRTLLLMQRTGLIELVFAAPDLPHWLRESRDENDQVVRDWFASYYSKVHIRHCNDLHHS
EEYWNTFVDKARHEELSKRRTAFDLLKMCILAPRPSLCQIFRKFYIYQHHAPELTCGGCP
GCRAQGKTSFSPTVGADVKVLQATPKKRARFVGAEKKVYYKEDLDIRTLLSELRVPLRQL
IGSGDYETIRAEKADFIYLGRALDSVSPFWCVQKMAAPTSDSAEIVIVANTATELPALPA
SRYERIIIAPQHLLDPQHPYRKWWDSAGNSQSLDTFIRQLQHVNHQ
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atggaagaacaatggtcgcgcctgcagcaggcattagcaacatgttttaatgacgatgtc
actttcaaggatggtattgagaacccctttttgctgcggttaatgaatatcgttaccgac
gcctcagcaaagacaagtgatatttttgctggttatgtcgatgcactccgcacggcacag
gcaaacggcatcgacaacccttggcttccctctcccccttcattgacggagttgccagat
cctcgctgggggctggaaaaaaacgtcgttgggcagacgctgtcactctctgttgaagtt
gacctgacgagcaccaaagccacctaccaactcagaactcgacgtaatttattgcagccg
gagatagatcctgccctcaaaaatctgctggtcgacacgccccatacgcactatcgcggc
ttcggacagcaggcagcgattcgcacgttgctcacctcagacatcaacagcaccctggtg
gttaatcttcccactagttgcggtaagagtctcatcacgcaagtccaggctatcagtgca
ccatttggttcgttaacgctggttattgtcccaacggtagctctcgcaattgaacaggcg
gattttatgcgagatatgctgcgtcaggccgagcaagatcacggcgggaactacgcgtgg
gtcggcggccaggatcagacaactcgccagacgttgaaagaacggttgaaaaacggctca
cagcgggttttgttttgctcacctgaggcagccaaatcgtcgttggttccggtgctgttt
gagttggcaaaaaataacctgattagtgcagttgttatcgacgaagcacatcttatcgac
caatggggtgctgaattccgccctgattttcagctgatcgcgccacttattcgctcatta
aaagcacaatccggatgccggtttcgtactctgctgctctctgccacctggaaccagagt
acccgtgatgttatcgttgagcagttccgtgcagatgacagcgaactcattgagattacg
gcgaacttcctgcgtcctgaacctgaatatttcattcatgccgagcccaatcctgaagca
caccagcagcgcgttgagcgactgttgatgacgcttccacgcccgctcattctatattgc
acaactcaggaagaagcggaaaactggcatcgccgacttcaggtacagaattaccagcgt
gttggtctgttccatggagacacggaagtcctagatcgaaaaaagctgatttcacaatgg
gcaagtgatcaactggacatcatgattgccacctcggcatttggtgtaggcatgaataag
agcaacgtccgtacggtcattcatgcagccattccagaaaatatcgatcgctattatcag
gagtgcggacgtgccgggcgtgatggcaaagcctgtcaggcgcatctggtctggcacagc
gaacaaatggagaccgcagaaagtctctcggtcgaaaaactgatcagcgtcgaaaaaggc
ttcttgcgttggaaggctatgtttgaacaacgccagccaagcgatatcgccagttattgc
atctcgctggataccaaacccgatcacgttgattatcagggcaaccggaatcaggcctgg
aatcgcagaactctgttgctgatgcagcgcaccgggctgattgaactggtattcgccgca
ccggaccttcctcactggcttcgggaaagtagggacgaaaatgatcaggtagtccgcgac
tggtttgccagttattacagcaaagtgcatattcgtcactgcaacgatttgcaccactct
gaagagtactggaacacctttgttgataaggctcggcacgaggaactgagcaagcgacgc
accgcctttgacctgctgaaaatgtgtatcctcgctccccgcccttctctgtgtcaaata
ttcagaaaattttatatttatcagcaccatgcaccagagttgacctgcggcggctgtccg
ggctgtcgggctcagggcaagacctcattttctcccaccgtcggggctgatgtaaaagtt
ttgcaagcaacaccgaagaaaagagcacgcttcgttggtgcagagaagaaagtgtattac
aaggaggatttggatattcgaactctgctgtcagaacttcgtgtgccacttcgccaactg
atcggctccggtgattatgagacgattcgagcagaaaaagccgatttcatctatctggga
cgcgccctagattccgtctcccccttctggtgcgtacaaaaaatggctgcgccaacctca
gacagtgcggaaattgtgattgtggccaataccgccacggagctaccggcactgccagcg
tcgcgctatgaacgtatcatcatcgctccgcagcatttgttagacccacagcatccttac
agaaaatggtgggacagcgcaggaaactcgcagtccctggacactttcatcaggcaacta
cagcatgtcaatcatcaataa
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