Aeromonas hydrophila J-1: V469_22115
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Entry
V469_22115 CDS
T03574
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ahj
Aeromonas hydrophila J-1
Pathway
ahj03420
Nucleotide excision repair
ahj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ahj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V469_22115 (uvrD)
03430 Mismatch repair
V469_22115 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahj03400
]
V469_22115 (uvrD)
Enzymes [BR:
ahj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V469_22115 (uvrD)
DNA repair and recombination proteins [BR:
ahj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V469_22115 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
V469_22115 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AJE38406
LinkDB
All DBs
Position
complement(4800301..4802472)
Genome browser
AA seq
723 aa
AA seq
DB search
MDVSTLLDGLNDKQRDAVAAPRCNLLVLAGAGSGKTRVLVHRIAWLMQVERCSPFSIIAV
TFTNKAAAEMRGRVEKVIGDGVRGMWIGTFHGIAHRLLRAHHLDAGLPQDFQILDSDDQY
RLIRRVLKALNLDEKHWVPRAVMGYINGKKDEGLRPGDIDLYGDPVTRTYQQIYKTYQET
CDRSGLVDFAELLLRAHELWLNKPHILEHYRDRFQNILVDEFQDTNGIQYAWLRMLAGDT
GKVMIVGDDDQSIYGWRGAKIENIQRFLTDYQGAETIRLEQNYRSTANILKAANCVIANN
AERLGKELWTEGAEGEPISLYAAFNEVDEARFVVGRLKDWKEKGGLLADCAILYRSNAQS
RVLEEALMQDAMPYRIYGGLRFFERQEIKDAMAYLRLINNRGDDASFERVVNTPTRGIGD
RTLEILRNNARDQGLNLWQSAKALLNDKVLTGRAGNAVRGFVELIDALESQVSRLPLHQQ
ADIAIQHSGLKAMYLAEKGEKSQARVENLDELVTACRQYQRPDELEDMSDLSAFLAHAAL
ESGENQADEYADAVQLMTLHSAKGLEFPLVLLVGVEEGMFPSQQSTEESGRLEEERRLCY
VGMTRAMEKLYICYAESRRIYGREMFHKPSRFIREMPAECLEEIRLRTQVSRPTQYGRFS
QNEVQQSFDASGIKLGQRVLHPKFGEGIVLNFEGVGQQSRVQIQFDDVGAKWLVTAYARL
EAL
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcaaccctgctcgacgggctcaatgacaagcaaagagacgcggtggcggcc
ccccgttgcaacctgctggtgctggccggtgccggttcgggcaagacccgggtgctggtg
caccgtatcgcctggctgatgcaggtggaacgctgttcacccttctccatcatcgcggtg
acctttaccaacaaggcggcggccgagatgcgcggccgggtcgagaaggtgatcggcgac
ggcgtgcgtggcatgtggataggcaccttccacggcatcgcccaccgcctgctgcgggcc
caccatctggatgcagggctgccgcaggatttccagatcctcgattccgacgaccagtac
cgcctcattcgccgggtgctcaaagcgctcaacctcgacgagaagcactgggtcccgcgc
gccgtgatgggctacatcaacggcaagaaggacgaggggctgcgccccggcgacatcgac
ctctacggcgaccccgtcacccgcacctatcagcagatctacaagacctatcaggagacc
tgcgatcgctccgggctggtggattttgccgaactcttgctgcgcgcccacgagctgtgg
ctgaacaagccccacatcctcgagcactaccgcgatcgcttccagaacatcctggtggac
gagttccaggacaccaacggcatccagtacgcctggctgcggatgctggcgggcgacacc
ggcaaggtgatgatcgtcggcgacgatgaccagtccatctacggctggcgcggcgccaag
atagagaacatccagcgcttcctgaccgactatcagggcgccgagaccatccgcctcgag
cagaactaccgctccaccgccaatatcctcaaggccgccaactgcgtcatcgccaacaac
gccgagcgccttggcaaggagctgtggaccgagggggccgagggcgagccgatctcgctc
tatgccgccttcaacgaggtggacgaggcccgcttcgtggttggccgcctcaaggattgg
aaggaaaaaggtggcctcctggccgactgcgccatcctctatcgctccaacgcccagtca
cgggtgctggaagaggcgctgatgcaggatgccatgccttaccgcatttacggcggcctg
cgcttcttcgagcgccaggaaatcaaggacgccatggcctatttgcggcttatcaacaac
cgtggcgacgacgccagcttcgagcgggtggtcaacaccccgacccgcggcatcggcgat
cgcaccctggaaatcctgcgcaataacgcccgcgatcaggggctcaacctgtggcaatcg
gccaaggccctgctcaacgacaaggtgctgaccggtcgcgccggcaacgcggtgcgcggc
tttgtcgagctgatcgacgcattggagagccaagtctcccggctgcctctgcaccagcag
gcggatatcgccatccagcactccggcctcaaggcgatgtatctggcggaaaaaggcgag
aaatcccaggcgcgggtagagaacctggacgagctggtcactgcctgccgtcagtaccag
cgcccggacgagctggaggacatgagcgatctctccgccttcctcgcccacgcggcgctg
gaatccggcgagaatcaggcggacgaatatgccgatgcggtgcagctgatgaccctgcac
agcgccaaggggctggagttcccgctggtgctgctggtcggcgtcgaagaggggatgttc
cccagccagcaatccaccgaggagtcgggccggctggaagaggagcggcgcctctgttac
gttggcatgacccgcgccatggagaagctctacatctgttatgccgagagccgccgcatc
tacggccgcgagatgttccacaagccgagccgctttatccgcgagatgcccgccgagtgt
ctggaagagatccggctgcgcacccaggtcagccgccccacccaatatggccgcttcagc
cagaacgaggtgcagcagagcttcgacgccagcggcatcaagctcggccagcgggtgctc
catcctaaatttggggaaggaatcgtgctcaacttcgaaggggtcggccagcagagccgg
gtgcagatccagttcgacgacgtcggcgccaagtggctggtgacggcgtatgcccgcctt
gaggcgctgtaa
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