Aeromonas hydrophila J-1: V469_22750
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Entry
V469_22750 CDS
T03574
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ahj
Aeromonas hydrophila J-1
Pathway
ahj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V469_22750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahj03019
]
V469_22750
Enzymes [BR:
ahj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V469_22750
Messenger RNA biogenesis [BR:
ahj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V469_22750
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AJE38517
LinkDB
All DBs
Position
4934959..4936248
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AA seq
429 aa
AA seq
DB search
MSKTHLTTDKFAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKT
LAFLAATFNYLLTHPLTKPRLINQPRAIIMAPTRELAVQIYNDAESMSASTGLKLGLAYG
GEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIR
FLFRRMPPATERLSMLFSATLSLRVQELAYEHMNHPEHVQIEPEQMTGVRIKEELFYPSN
EDKMLLLLSLMEEEWPEKAIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILE
DFTKGTVDILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLA
CEDYAFNLPAIEEYIHHPIPVSKYDREALLDDVTAPKRVFRNRQPVNRNMRDRQGGGNSN
NRRRPPRKS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttaacgaccgacaaattcgcccaaatgggcctcgaacccgaagtt
ctggctggtctggaatcaaagggatttcactattgcacccccatccaggctctgtctctg
ccactgctggtagaaggtcatgacctcgccggtcaggcccagacagggaccggcaaaacc
cttgccttcctggccgccaccttcaactatttgttgacccatccgctgaccaagccgcgc
ctcatcaaccagccgcgcgccatcatcatggccccgacccgggagctggcggtccagatc
tacaacgacgcggagagcatgtccgcctcgaccggcctcaagctcggcctcgcctacggt
ggcgaagggtacgacaagcagctggccgtgctggagcaaggggtcgacattctgatcggc
accaccggccgcatcatcgactacttcaagtccaaggtcatcgatctgagcaatattcag
gtcgtggtactggacgaagcggatcgcatgttcgatctcggcttcatcaaggacatccgt
ttcctgttccgccgcatgccgcccgctaccgagcgtctgagcatgctgttctccgccacc
ctctccctgcgggtgcaggagctggcctacgaacacatgaaccacccggaacatgtgcag
atcgagccggagcagatgaccggcgtgcggatcaaggaggagctgttctacccctccaac
gaagacaagatgttgctgctgctctccctgatggaagaggagtggccggagaaagccatc
gtcttcgccaacaccaagcacgtctgtgaagacgttcatgcctggctggagaacgacggc
caccgcgtcggcctgctgaccggtgacgtgccgcagaagaagcggatgaagatcctggaa
gacttcaccaagggcacggtcgacatcctggttgccaccgacgtggccgcccgcggtctg
cacatcccggacgtgacccacgtcttcaactatgacctgcccgacgacgccgaagactac
gtacaccgcatcggtcgtaccggtcgtgccggcaagagcggtcactccatcagcctggcc
tgtgaagactatgccttcaacctgccggccatcgaggagtacatccaccacccgatcccg
gtcagcaaatatgaccgcgaggcgttgctggatgacgtgaccgcaccgaagcgggtgttc
cgcaaccgtcagccggtgaatcgcaacatgcgcgatcgccagggcggtggcaacagcaac
aaccgccgtcgtccgccccgcaagagctga
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