Acholeplasma hippikon: NCTC10172_00938
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Entry
NCTC10172_00938 CDS
T06645
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ahk
Acholeplasma hippikon
Pathway
ahk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ahk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC10172_00938 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahk03021
]
NCTC10172_00938 (rpoC)
03400 DNA repair and recombination proteins [BR:
ahk03400
]
NCTC10172_00938 (rpoC)
Enzymes [BR:
ahk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC10172_00938 (rpoC)
Transcription machinery [BR:
ahk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC10172_00938 (rpoC)
DNA repair and recombination proteins [BR:
ahk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC10172_00938 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_A_CTD
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
VEU82912
UniProt:
A0A449BKF0
LinkDB
All DBs
Position
1:complement(956472..960596)
Genome browser
AA seq
1374 aa
AA seq
DB search
MANKELLTLPVESLKLSTQALERLKLSGIDRLEDFNTFNLKELQSLLGDSFQEVLPTLIF
YKLPRKVSDLSLSDESVNILESAGIYDLEMLLKYDKHALFHIFEEDQFLLKEINDLLALY
KQEVLHESLHDDDTIEIGGTKSTPVDAVEAQPASSRKDYGSRTFTHFKIRLASPDEIRNW
SYGEVVNHETINYRTSKPEPGGLFDERIFGPTRDYQCACGKKQTVNKGQICPKCGIEITE
SKVRRERMGHINLEAPVVHTWYLKSSPSRLAILLGIKAKQLEEVVYHAAYIVTDPGHNTP
LSKKQILTEQDYSALVEEYGGRFTALTGAEAVKKLLQDLDLDKEVKQLRRRLKTASKQKR
DRIIKRLEVVEAFNNSDNKPEWMVMDVIPVIPPDLRPMVPLDGGRFATTDLNDLYRRILN
RNNRLKKQKEQMAPRLITKNEKRMLQEAVDALFDNAKRGKKAAVERNRHLKSLSDLLRGK
QGRFRQNLLGKRVDYSGRSVIIVGPDLEMYQCGIPREMAITLFKPFILRELQLTTGAEKK
NANAKYEKRDEDTWRALEKVVREHPVLLNRAPTLHRLGIQAFEPKLIDGKAIRLHPLVTP
AFNADFDGDQMAVHVPLSPEAQAEARLLMLASNNILNPKDGKPVVTPSQDMVLGNYYLTI
EERLDRDFGADVERAEEHRFKHRNEGKFYSSIEEAKIAYDNKEITLHTRIIMKPQAVKHT
FTEAQNEMYLVTTLGKLIFNEILPDTFPYVNEPTVTNLEEKTPDKYFIPKGVNPKEFLNA
MPSPQPFKKKFLSLVIARVFKIFHISETSKMLDKLKDLGFKYSTVAGITISFADINVYSK
KETELKKTQAEIDAIEEMYELGLSTESERKKQVIEKWTNLRAQIQQDVMNEFDKSNNIFM
MADSGARGNVSNFTQLIGMRGLMSNPKGETIEVPVTSSFREGLTVSEFFISTHGARKGST
DTALKTAESGYLTRRLVDVSQDVIIVEDDCGSNHGLLVEAIIDESGKDVVPLYDRILGRF
AAKDVVNPKTGEVFVKRNELITDEIASAITKAGIKSVEIRSTLTCNSDHGICAKDYGINL
ATNKYVEVGEAIGVVAAQSIGEPGTQLTMRTFHTGGVASGADITQGLPRIQELFEARNPK
GKSVISEVRGKVKEVSRKGGSVMITVADAKDNEFKYTLDPNIESLVKKGDTVEAGQKLSN
GSINPKELLRVADTTKASEYILEEVQKVYRAQGVEISDKHVEVIIRQMLRRIMVVIEGDT
DLLPGTEVSIAEFKRANRKALQEKKRLAVGRPILLGITRASLRSDSFLSAASFQETTRIL
TDAAIKGKRDELHGLKENVIIGGLIPAGTGILKEKSFYYDKPQSQLPAFEDDVE
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaaagaactattaactttaccagttgaatcactaaaattatctacacaagcg
ctagaaagattaaaactctcaggtattgatcgtttagaagattttaatacatttaattta
aaagaattacaaagtctattaggtgattctttccaagaagtattaccaacattaattttc
tataaattaccaagaaaagtatcagatttatctttatcagatgaaagtgtaaatatctta
gaatcagcaggtatttatgatttagaaatgttattaaagtatgacaaacatgctttattc
cacatttttgaagaagatcaattcttattaaaagaaattaacgatttattagctttatac
aaacaagaagttttacatgaatcattacatgatgatgacacaattgaaattggtggtact
aaatctacgcctgttgatgcggtagaagcacaaccagcttcaagcagaaaagattatggt
tcaagaactttcactcacttcaagattagattagcttcaccagatgagatcagaaactgg
tcttatggtgaagtagttaatcatgaaacaattaactaccgtacaagcaaacctgaacca
ggtggactatttgatgaaagaatctttggtccaactcgtgactaccaatgtgcttgcggt
aaaaaacaaacagtaaacaaaggtcaaatctgtccaaaatgtggtatcgaaattactgaa
tctaaggtaagacgtgaacgtatgggtcacatcaacttagaagctccagttgttcacaca
tggtatttaaagagctcaccttcaagattagcaattctattaggaatcaaagctaaacaa
ttagaagaagttgtataccatgcggcttacattgttactgatccagggcataacacgcca
ttatctaagaaacaaattttaactgaacaagattattctgcattagttgaagaatacggt
ggaagattcactgcattaactggtgctgaagccgttaagaagttattacaagatttagac
ttagataaagaagttaaacaattacgtcgtcgtttaaagactgcttctaaacaaaaacgt
gatcgtatcattaaacgtttagaagttgttgaagcattcaataattctgacaataaacct
gaatggatggttatggatgttattccagttatcccaccagatttacgtccaatggttccg
cttgatggtggtagatttgctacaacagacttaaacgatttatatcgtcgtattttaaac
cgtaataaccgtttaaagaaacaaaaagaacaaatggcaccacgcttaattactaagaac
gaaaaacgtatgttacaagaagcggttgacgcattatttgacaatgctaaacgtggtaag
aaagctgctgttgaaagaaatagacatcttaaatcattatctgatttattacgtggtaaa
caaggtcgtttccgtcaaaacttacttggtaaacgtgttgactactcaggacgttcagta
attatcgtcggaccggacttagaaatgtaccaatgtggtattccacgtgaaatggcgatt
acattattcaagccatttatcttaagagaattacaattaactactggcgctgaaaagaaa
aatgccaatgctaaatatgaaaagcgtgatgaagatacatggagagcattagaaaaggtt
gttcgtgaacatccagttctattaaaccgtgccccaacacttcacagacttggtattcaa
gcatttgaacctaaattaattgatggtaaagcaattcgtcttcacccattagttacacca
gccttcaacgctgacttcgacggtgaccaaatggccgttcacgttccactttcaccagaa
gcacaagctgaagcaagattattaatgttagcttcaaataacatcttaaaccctaaagat
ggtaaaccagttgttacgccatctcaagacatggttttaggtaactattatttaacaatt
gaagaaagattagacagagactttggtgctgatgttgaacgtgcagaagaacacagattc
aaacacagaaacgaaggtaaattttactcttcaatcgaagaagctaagattgcttacgat
aataaagaaattacattacatacaagaatcattatgaaacctcaagctgtaaaacataca
ttcactgaggctcaaaatgaaatgtatttagttactacattaggtaagttaattttcaat
gaaatcttacccgatacattcccatatgttaacgaaccaactgtaactaacttagaagaa
aaaactccggataaatactttattccaaaaggtgttaatccaaaagaattcttaaatgca
atgccatctccgcaaccatttaagaagaaattcctatcattagttattgctcgtgtattc
aagattttccatatttctgaaacatctaagatgttagacaaacttaaagacttaggattt
aaatattctacagttgcagggatcacaatttcatttgctgatatcaacgtttactctaag
aaagaaacagaacttaagaagactcaagcagaaattgatgcaattgaagaaatgtatgaa
cttggtctttcaactgaatcagaaagaaagaaacaagttattgaaaaatggactaacctt
agagctcaaattcaacaagacgtcatgaatgagttcgataagagcaacaatatcttcatg
atggctgactcaggagcccgtggtaacgtatcaaacttcactcagttaattggtatgcgt
ggtctgatgagtaaccctaaaggggaaactattgaagtcccagttacatcttcattccgt
gaaggtttaacagtttctgaattcttcatctcaacacacggtgcgcgtaaaggttctacc
gatacagccttaaagactgctgaatcaggttacttaactcgtcgtttagttgacgtttca
caagatgttatcattgttgaagatgattgtggatcaaatcatggtttacttgtagaagct
attattgacgaatcaggtaaagatgttgttccattatatgatagaatcttaggtcgtttt
gcagctaaagatgttgtaaatcctaagactggtgaagtattcgttaaacgtaatgaatta
atcactgatgaaattgcatcagcaattactaaagcaggtattaaatcagttgaaattaga
tcaacattaacatgtaactcagatcatggcatttgtgctaaagattatggtattaactta
gcaacaaataaatatgtagaagttggggaagcaattggggttgtcgcagcgcaatcaatt
ggtgaaccaggtactcagttaaccatgcgtacattccatacaggtggggtcgcatcaggt
gccgatattactcaaggtcttccacgtatccaagaattatttgaagcacgtaatccaaaa
ggtaaatcagttatttctgaagttcgcggtaaagttaaagaagtatcacgtaaaggtggc
tctgtaatgattactgtcgctgatgctaaagacaatgaatttaaatacacattagatcca
aatattgaatcactagttaagaaaggcgatacagtagaagctggtcaaaaactttctaac
ggttcaatcaatccaaaagaattattaagagttgcagatactacaaaagcaagcgaatat
atcttagaagaagttcaaaaggtatatcgtgcgcaaggggtagaaatttctgataaacac
gttgaagttattattcgtcaaatgttaagacgtatcatggtagttattgaaggtgacact
gatttattaccaggtactgaagtatcaattgctgaattcaaacgtgctaatagaaaagct
cttcaagagaagaaacgtcttgcagttggacgtccaatcttactaggtattacacgtgct
tcattacgcagtgattcattcttatctgctgcatcattccaagaaactacaagaatctta
actgatgctgcaattaaaggaaaacgtgatgaattacacggattaaaagaaaatgtaatt
atcggtggattaatccctgcaggtacaggtatcttaaaagaaaaatctttctattacgat
aaaccacaatctcaattaccagcgtttgaagacgacgtagaataa
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