Atlantibacter hermannii: NCTC12129_00521
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Entry
NCTC12129_00521 CDS
T05790
Symbol
csrD_1
Name
(GenBank) putative signal transduction protein
KO
K18765
RNase E specificity factor CsrD
Organism
ahn
Atlantibacter hermannii
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahn03019
]
NCTC12129_00521 (csrD_1)
Messenger RNA biogenesis [BR:
ahn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC12129_00521 (csrD_1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Hrs_helical
Motif
Other DBs
NCBI-ProteinID:
VDZ71459
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All DBs
Position
1:478504..480444
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AA seq
646 aa
AA seq
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MRLTTKFSALVTLLTGLAILVTLFGCAASFYTSVQYKLEKRISAVVTLIDNDLLFNTPEA
LAPRLAGMMAPVDISKIEFIERRKTVLSVKAPPAYRQLSSVERWRSETFPLLKNPGMAVR
VTWSDPVVNYFRSMLTTAPLSIAIIFMVMMVMLGGRWIRRQLAGLELLETRASRILNGER
GSRVRGSVHEWPTRASSAIDILLSDIQHANEQRTRMDRLIRAFAAQDSKTGLSNRLFFDN
QLATLLEDQENVGTHGVVMMIRLPDFDTLRDTWGKSEVEEYLFNLINMFSTFIMRYPGAL
LARYFRSDFAVLLPHRTLKEAEGIASQLLNALDALPPTRMLDSADMLHIGICTFRSGQTI
ESVIENAQLATRNAVLQGGNGWSVYDETAPEKGRGNVRWRTLIENVLQRGGPRFYQKPAV
TCEGWVHHRELMCRIFDGEEEVLAAEFMPMVRQFGLAEQFDRQLITRIIPFLRFWPEETL
AISVSVESLIRPSFQRWLRDSLMQCEKSQRKRILFELAEADVCQHINRLHPVVRLIQALG
ARIAVVQAGLTVVSTSYIKDLHVEVVKLHPGLVRNIEKRTENQLFVQSLVEACSGTQAQL
FAAGIRSRSEWQTLVERGVSGGQGDFFMASQPLDTSIKKYSQRFSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaattctctgctcttgtgactttgctgaccggtctggccatactg
gttacgctcttcggctgcgctgccagcttttacacgtctgttcagtataagctggaaaaa
cgcatctccgcggtagtgacgctgatcgataatgacctgctgttcaatacacctgaagcg
ctggctccccgcctggccggaatgatggctcccgtcgacatttcaaaaatagaatttatt
gaacgccgcaagacggtgttaagcgtcaaagcgccgcctgcctaccggcaactgagcagc
gtggagcgctggcgtagcgagacgtttcccttgctgaaaaatccaggcatggcggttcgc
gtgacctggagcgacccggtggtgaattatttccgctcgatgctgacaaccgcgccgctc
agcattgcgattatttttatggtcatgatggtgatgctgggcggccgctggattaggcgc
cagctggccgggctggaactcctggaaacccgtgccagccggatcctcaacggtgaacgc
ggcagcagggtccgcggttcggttcatgaatggccgacgcgggccagcagcgcgatagat
atactgctttctgatattcagcatgctaatgaacagcgcacgcggatggaccgcctgatc
cgcgcctttgcggcccaggactcaaaaacggggctcagtaatcggctcttttttgacaat
caactggcgacactgctggaagaccaggaaaacgttggtacgcatggtgtggtgatgatg
attcgcctgccggatttcgacacgttgcgtgacacctggggcaaatcggaagtcgaagag
tatctcttcaatctgatcaatatgttctctacctttattatgcgttaccccggcgcgctt
ctggctcgctatttccggagcgattttgccgtcttgcttccccatcgcacattaaaggaa
gcagagggcattgcgagccagttgctgaatgccctggatgcgctacctcccacgcgaatg
ctggatagcgccgatatgctgcatatcgggatctgcacgtttcgcagcggtcaaaccatc
gaaagcgtcattgaaaacgcccaactggcgacgcgtaatgcggtgctccagggagggaac
ggctggtcggtttacgatgaaaccgccccggaaaaagggcgcggcaatgtacgctggcgg
accctcatcgaaaatgtcctgcaacgcggcggtcctcgcttttatcaaaagccagctgtg
acctgtgagggttgggtgcatcaccgggaattgatgtgccgtatttttgacggcgaagaa
gaggttctggccgcggaattcatgccgatggtgaggcagtttggcctcgccgagcaattt
gatcgccagcttattacccgcattattccttttttgcgcttctggccggaagaaaccctg
gcgatttccgtgtccgttgagtcgttaatccgcccctcatttcagcgctggctgcgggat
tcgctgatgcaatgtgaaaaatcgcaaagaaaacgtattctttttgaacttgcagaggcg
gatgtttgtcaacacatcaaccgtttgcacccggtggtgcgattgatccaggcgctgggc
gcgcgtatcgccgtagtacaggctggattaaccgtggtaagcacctcgtacattaaagat
ctgcatgtcgaggtggtgaagctccatccggggttggtgcgcaacattgaaaagcgcaca
gaaaatcagctatttgtgcagagtctggtagaggcgtgcagcggaactcaggcccagtta
tttgcggccgggatccgcagccgaagtgaatggcagacgctggtagaacgtggggtgagc
ggtggtcagggtgatttttttatggcctcgcagccgctggataccagcataaaaaaatat
tctcaaagattctctgtttga
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