Atlantibacter hermannii: NCTC12129_00980
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Entry
NCTC12129_00980 CDS
T05790
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ahn
Atlantibacter hermannii
Pathway
ahn03030
DNA replication
ahn03430
Mismatch repair
ahn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12129_00980 (dnaE)
03430 Mismatch repair
NCTC12129_00980 (dnaE)
03440 Homologous recombination
NCTC12129_00980 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahn03032
]
NCTC12129_00980 (dnaE)
03400 DNA repair and recombination proteins [BR:
ahn03400
]
NCTC12129_00980 (dnaE)
Enzymes [BR:
ahn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC12129_00980 (dnaE)
DNA replication proteins [BR:
ahn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC12129_00980 (dnaE)
DNA repair and recombination proteins [BR:
ahn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC12129_00980 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
MutS_II
Motif
Other DBs
NCBI-ProteinID:
VDZ71906
LinkDB
All DBs
Position
1:900942..904424
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGGAHGA
GMKPIIGADFNVHNPIMGDELNELTVLAADNTGYQNLTLLISRAYQRGYGAAGPFIDLDW
LAEHRDGLILLSGARKGDVGKSLLRGNMALVDQCLSFYQQHFADRFYLELIRTGRTDEER
YLHAAVALAEEKGLPVVATNDVRFINTDDFDAHEIRVAIHDGFTLDDPKRPRNYSTQQYM
RSEDEMCELFADIPEALANSVEIARRCNVTVRLGEYFLPQFPTGDMTTEDFLVAKSKEGL
EERLEFLFPDPEERAKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEMGQHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRRAKQGLEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFEEGAKNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYANCQPWPEQTVLDGERETLGLY
LTGHPINQYLKEIERYVGGMRLKDMHPTERGKVITAAGLVIASRVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALEKYQHLLEQDRILIVSGQVSFDDFSGGLKMTAREVMDIADAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgaacctcgttttgtacacctgcgggtgcacagtgactattccatgatcgatggg
cttgccaagacgggaccgctggtaaaaaaggcggcctctttgggtatgcctgcgctggcg
atcaccgacttcaccaacctgtgcggtctggttaagttttacgggggtgcccacggcgca
ggtatgaagccgattatcggcgctgattttaatgttcataatccgatcatgggcgatgaa
ctgaatgagcttacggtgctggccgccgataataccggctaccaaaaccttaccctgctt
atttctcgcgcatatcagcgtgggtacggcgctgccggaccgtttatcgatctcgactgg
ctggctgagcaccgggacgggttaatcctgctttccggcgcgcgtaagggcgatgtgggc
aagagtttgctacgtggcaatatggcgctggttgatcaatgcctgagcttttatcagcag
cactttgccgatcggttttacctggaactcatccgcaccggacgtactgacgaagagcgg
tatctgcatgccgccgttgcccttgcggaagagaaaggtctgccggttgtcgccactaac
gatgtgcgctttattaataccgacgatttcgacgcccatgagattcgcgtcgccattcat
gacggtttcaccctcgacgatcccaaacgcccgcgcaactattcgacgcagcaatatatg
cgcagcgaagatgaaatgtgcgagctgttcgcggatatcccggaagcgctggcaaacagc
gtcgaaattgcccggcgctgtaacgtcacggtgcgcctcggcgaatatttcctgccgcag
ttcccaaccggggatatgaccacggaagatttcctggtcgcgaagtcaaaagaggggctg
gaagagcgtctggagtttttattcccggacccggaggagcgcgccaaacgtcggcctgag
tacgatgagcgtctggatattgagctccaggtgatcaaccagatgggctttccgggttac
ttcctgatcgtaatggaatttatccagtggtcgaaagacaacggcgtgccggtagggcca
ggccgtggatcgggcgcagggtcgctggtggcttacgcgctgaagatcaccgatctcgat
ccgctggaattcgacctgctgttcgaacgcttcctcaaccccgaacgtgtttccatgcct
gacttcgatgtcgatttctgtatggaaaaacgcgaccaggttatcgatcacgttgctgag
atgtatggccgcgaagcggtatcgcagatcatcaccttcggaaccatggcggcgaaagca
gtgattcgcgacgttggccgtgttctgggccatccgtacggttttgtcgatcgtatatct
aaactggtgccgccagacccgggcatgacgctggcaaaggcgtttgaagccgagccgcaa
ttgccggaaatttacgaggcggatgaagaagtcagagcgctgatcgatatggcgcgcaag
ctggaaggggtgacccgtaacgccggtaaacatgcgggcggtgtggtgatcgcgccaacg
aaaattaccgatttcgcgccgctttactgcgacgaaatgggccagcatccggtgacgcag
ttcgataaaaacgacgtcgaatacgcgggcctggtgaagttcgacttcctggggctgcgt
acgctaacgatcatcgactgggcgctgaagatgatcaacccgcgtcgggcgaagcagggt
ctggagccgattgatatcgccgcgatcccgctggacgacaagaaaagcttcgatatgctg
caacgctcggaaacgactgcggtattccagcttgaatcacgcggcatgaaggacctgatc
aaacgcctgcagccggactgtttcgaagacatgatcgcactggtggccctgttccgtccg
gggccgttgcagtcgggcatggtggataactttatcgaccgtaagcatggccgtgaagcg
atctcctatccggatattcaatggcagcatgaaagcctgaaacccgttctggagcccacc
tacggcattatcctgtaccaggaacaggtaatgcagattgcccaggtgctttccggctat
acccttggcggcgcggacatgctgcgtcgtgccatgggtaaaaagaaaccggaagaaatg
gcgaagcagcgctcggtatttgaagagggcgcgaagaataacggcgttgacggcgaactg
gcgatgaaaatcttcgaccttgtggagaaattcgcaggttatggatttaacaaatcgcac
tcggcggcctatgctctggtatcctaccaaacgctttggttgaaggcgcactatccggcg
gagtttatggcagcggtcatgacggcggatatggataacaccgataaggtcgtgggcctg
gtcgatgaatgttggcgaatggggctgaagatcctgccgcccgacattaactccgggttg
tatcatttccacgttaacgatgacggggagattgtttacggcatcggcgcaatcaaaggt
gtaggcgaagggccgattgaggccattatcgaagcgcgtaatcagggtggttatttccgc
gagctgtttgatctgtgcgcacgcaccgataccaaaaagctcaaccgccgggtgcttgaa
aaactgatcatgtccggggcgtttgaccgccttggcccgcatcgcgccgcattgatgaat
tcactcggcgacgcgttaaaagcggcagaccagcacgcaaaagcggaagccattgggcag
gcggatatgttcggcgtactggcggaagagccggagcaggttgaaaaatcctacgccaac
tgccagccatggccagaacaaacggtactggatggtgaacgggaaaccctggggctttat
ctgaccgggcacccgatcaaccagtacctgaaagaaattgaacgctatgtcggtggcatg
cgtctgaaagatatgcatccgacagagcgtggtaaagttatcacggctgcggggcttgtg
attgcgtcgcgggttatggtcaccaagcgaggcaatcgtatcggcatctgtacgttagat
gaccgttccgggcggcttgaggtgatgttattcaccgatgcgctggaaaaataccagcat
ctgctggaacaagaccggatcctaatcgtcagcggacaggtcagctttgatgactttagc
ggaggccttaaaatgaccgctcgcgaagtgatggacattgcagatgcccgcgaaaagtat
gcgcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccatcgttcgggaaccattccagtacatctctactatcag
agggcggatgcacgcgcgagattgcgttttggcgcaacgtggcgtgtctctccgagcgat
cgtttactgaacgatttgcgtggcctgattggttcggagcaggtggaactggagtttgac
taa
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