Atlantibacter hermannii: NCTC12129_02043
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Entry
NCTC12129_02043 CDS
T05790
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ahn
Atlantibacter hermannii
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ahn03016
]
NCTC12129_02043 (rnd)
Enzymes [BR:
ahn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NCTC12129_02043 (rnd)
Transfer RNA biogenesis [BR:
ahn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NCTC12129_02043 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
pKID
Motif
Other DBs
NCBI-ProteinID:
VDZ72936
LinkDB
All DBs
Position
1:1920803..1921912
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AA seq
369 aa
AA seq
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MITTNDALAACCEAARLHPALALDTEFVRTRTFYPQLGLIQLYDGEQVSLIDPLTITEWA
PFRALLRDVNVTKFLHAGSEDLEVFQNAFGMMPEPFIDTQILASFSGHALSCGFAALVES
FTGIALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAKQLVDKTRESGWLEAALDECR
LMMARRAEQADPEEVWRDIGNAWQLRTRQLACLKLLAAWRLKKARERDLALNFVVREEHL
WQVARFMPTSLGELDSLGLSGSEIRFHGKTLLALVAQTQALPESALPEPIANLVDMPGYR
KIFKDIKAIVQATSEAKGVSAELLASRRQINQLLNWHWNLKPRTTQPELISGWRGELLGE
PLKALLSGI
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgatcaccaccaatgacgcgctcgccgcctgttgcgaggccgcgcgtcttcacccggcg
ttagcgctggataccgaattcgtccgtacccgcactttttatccgcagctggggcttatt
cagctttatgacggcgaacaggtgtcgctgatcgatcccttaaccatcaccgagtgggcg
ccgttcagggccctgttgcgggatgttaacgtcaccaagtttctccatgcaggtagtgaa
gacctggaagtttttcagaacgcgttcggtatgatgccggagccgtttattgatacccag
atcctggcctcgttttccggccatgccttgtcctgcggattcgctgcgctggtggaaagc
tttaccggtattgccctggataaaagcgaatcgcgcaccgactggctggcgcgcccgttg
acggagcggcagtgcgattatgccgcggcggatgtctggtatctgctgcccattgctaaa
caactggtcgacaagacgcgtgaatccggctggctggaagcggcactggatgaatgccgg
ttgatgatggcccgtcgcgctgagcaagccgatcccgaggaagtctggcgtgatattggt
aatgcctggcaactgcgtacccgtcagttagcctgcctgaaactgctggcagcgtggcgt
ctgaaaaaagcgcgtgagcgcgatttagcgcttaactttgtagtgcgcgaagaacatttg
tggcaggtcgcacgctttatgcccacatcattaggtgaactggacagcctgggactttcc
ggcagcgagatccgttttcatggcaaaaccttgctggcgttagtcgcccagacgcaggcg
ttaccggaatcggcgcttccggagccgattgccaatctggttgatatgccgggctatcgt
aaaattttcaaagatattaaagcgattgttcaggcaaccagcgaagcgaaaggggtgagt
gcagaactgcttgcctcacggcgtcaaattaaccagttattaaactggcactggaatctg
aaaccgcgcacgacgcagccggaattaatcagcggctggcgtggtgagttattaggcgaa
ccgctgaaagcgttattaagcggcatttaa
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