Atlantibacter hermannii: NCTC12129_02141
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Entry
NCTC12129_02141 CDS
T05790
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ahn
Atlantibacter hermannii
Pathway
ahn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC12129_02141 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahn03400
]
NCTC12129_02141 (mfd)
Enzymes [BR:
ahn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC12129_02141 (mfd)
DNA repair and recombination proteins [BR:
ahn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC12129_02141 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
VDZ73034
LinkDB
All DBs
Position
1:complement(1981153..1984599)
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AA seq
1148 aa
AA seq
DB search
MSEQYRYSLPAKPGDQRQLGELTGAACATEVAEMAERHAGPVVLIAPDMQNALRLHDEIR
QFTDSMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPAMQRGVLILPVNTLMQRVCPH
SFLHGHALVMKKGQRLSRDALRSQLEQAGYRHVDQVMEHGEYATRGALLDLYPMGSVQPY
RLDFFDDEIDSLRLFDVDTQRTLEEVEAINLLPAHEFPTDKNAIELFRTNWRDRFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPALFSYFPANTLVVNTGDLESSAQRFWADTV
ARFENRGVDPMRPLLPPEQLWLRTEELFTELKNWPRVQLKTEVLPEKAANTNLGYQPLPE
LSVKAQQKAPLDDLRKFLESFSGPVVFSVESEGRREALSELLARIKIAPKKLYRFDEASA
NGRYVILGSAERGFIDTRRQRALICESDLLGERVARRRQDNRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGITAEYLILMYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYSQRAAKTGFAFKHDREQYQLFCDTFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIELLSRFRSAKEQAQVLEQAAEGKVDILIGTHKLLQNDVRW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAADRLATLVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTGDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EGQSGQMETIGFSLYMELLENAVDALKEGREPSLEDLTNQQTEVELRMPSLLPEDFIPDV
NTRLSFYKRIASAKKPGELDEIKVELIDRFGLLPDAARNLLDIARLRQQAQKMGIRKIEA
HDKGGVIEFAEKNHVDPVWLIGLLQKSPQHFRLDGPTRLKFFQDLSERKNRMEWVSQFMT
QVQENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacaatatcgctattcattgcccgccaaaccgggcgatcaacgtcaactgggc
gaactcactggcgcggcctgtgccaccgaagtcgcagaaatggcggaacgccacgcggga
ccggtcgtactgatcgcgccggatatgcaaaacgccctgcgcctgcatgatgaaatccgt
cagtttaccgacagcatggtgatgaatctggcggactgggaaacgctgccgtatgacagt
ttctccccgcaccaggacattatctcctcgcgcctgtccaccctgtatcaactgcccgcc
atgcagcgcggcgtgttgattttaccggtcaatacgcttatgcagcgcgtatgcccgcac
agttttttgcatggtcatgcgctggtgatgaaaaaaggccagcgcctgtcgcgtgatgcg
ctgcgcagccagctggaacaggcgggttaccgccatgtggatcaggtgatggaacacggc
gagtacgcgacccgcggcgcgctgcttgatctgtaccccatgggcagcgtacagccctac
cgtctcgacttttttgacgacgaaatcgacagcctgcgcctgttcgacgtggatacccaa
cgaacgctggaagaagtcgaggccatcaatctcctgccggcgcacgagtttcctacagat
aaaaacgcgattgaactgtttcgcaccaactggcgcgaccggtttgaggtgaagcgcgat
gccgagcatatctatcagcaggtcagcaaagggacactgcctgccggtatcgaatactgg
cagccgctgttttttagcgagccgctccctgcgctgttcagctatttcccggccaatacc
ctcgtcgttaataccggcgatctggaatccagcgcgcaacgtttctgggcggatacggta
gcgcgttttgaaaaccgtggcgtcgatccaatgcgcccgctactgccaccggaacagttg
tggctgcgcactgaggaactgttcaccgagctgaaaaactggccgcgggtacaactcaaa
acggaagtgttgccggaaaaagcggccaacaccaacctcggttaccagccgctgccggaa
ctgtcggtcaaggcgcagcaaaaagccccgctggacgatttacgcaagtttctggagtct
ttcagcggtccggtggtgttttctgtggaaagcgaaggccgccgcgaagccctgtccgaa
ctgctggcgcggattaaaatcgcgccgaagaaactctatcgcttcgatgaagccagcgct
aatggccgctacgttattctgggctccgccgagcgtgggtttattgatacccgccgccag
cgggcgctgatttgcgaaagcgatttgctgggcgagcgtgtggcgcgccgtcgtcaggat
aatcgccgcaccatcaatccggacacgctcatccgtaaccttgcagaactgcatatcggg
caaccggtggtgcatcttgagcatggcgtgggccgttatgcgggcatgactaccctggaa
gccggtgggatcaccgcagaatatctcatcctgatgtatgccaacgacgccaaactgtat
gtgccggtgtcgtcgctgcacctgatcagccgctatgccggtggcgcagaagagaatgcg
ccgcttcataaactgggtagcgatgcctggtcgcgggcgcgtcagaaagcggcggagaaa
gtgcgcgatgtggcggcggaactgctggatatctactcgcaacgcgcagcgaaaaccggc
tttgcgttcaaacatgaccgcgagcaatatcagttgttctgtgacacattcccgtttgaa
accacaccggatcaggctcaggccatcaatgcggtgttgagcgacatgtgccagccgtta
gccatggatcgtctggtctgcggtgacgtgggttttggcaaaaccgaagtggcaatgcgt
gcggcgtttctggcggtagaaaacaataagcaggtggcggtgctggtgcccactactctg
ctggcgcaacagcatttcgacaatttccgcgaccgttttgccaactggccggtgcgcatt
gagttgctgtcgcgctttcgtagcgccaaagaacaagcccaggtgctggagcaggcagcg
gaaggcaaggtcgatattctcatcggcacccataagctgctgcaaaacgacgtgcgctgg
aaagatttgggcctgctgattgtcgatgaagagcaccgcttcggggtgcgccataaagag
cgcatcaaagcgatgcgggccgatgtggatattttaaccctgaccgccacgccaatcccg
cgaaccctgaatatggccatgagcggcatgcgcgatctgtcgatcatcgctacgccgccg
gcccgccgcctggcggtaaaaaccttcgtacgcgaatacgacagtctggtggtgcgcgaa
gctatcctgcgtgagatcctgcgcggcggccaggtgtactacctgtataacgatgtcgaa
aacatccagaaagccgccgacaggttggcaacgctggtgccggaagcgcgtatcgccatc
ggccacggccaaatgcgcgaacgcgaactggaacgggtgatgaatgatttccatcatcag
cgctttaacgtgctggtgtgcaccaccatcatcgaaaccggtatcgatattcctaccgcc
aataccatcattattgagcgtgccgatcattttggcctggcgcagctccatcagttgcgt
ggccgcgtggggcgctcgcaccatcaggcctatgcctggctgctgacgccgcatcccaaa
gcgatgaccggtgacgcgcaaaaacgccttgaggctatcgcctcgctggaagatttaggc
gcgggctttgcactggcgacccacgatctggaaattcgcggcgcgggcgaattgttaggc
gaaggccagagtgggcaaatggaaaccattggcttctcgctgtatatggagctactggaa
aacgcagtagacgcgcttaaggaaggccgtgaaccgtcgctggaggatctcaccaaccag
cagaccgaagtggagctgcgtatgccgtcgctgctgccggaagatttcatccccgatgtt
aatacgcgcctgtcgttttacaagcgtatcgccagcgccaaaaaacccggcgaactggac
gagatcaaagtggaactgattgaccgtttcggcctgttgccggacgcggcgcgcaatttg
cttgatatcgcccggttgcgccagcaggcgcaaaaaatgggcatccgcaaaatcgaggcg
catgataaaggcggcgtgattgaattcgctgagaagaatcatgttgacccggtgtggctg
attggcctgctgcaaaaatcgcctcagcatttccgcctcgacggcccgacgcgtctgaaa
tttttccaggacttaagcgagcgtaaaaaccgcatggagtgggtcagccagtttatgacc
caggtacaagaaaacgccgtcgcgtaa
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