KEGG   Atlantibacter hermannii: NCTC12129_02141
Entry
NCTC12129_02141   CDS       T05790                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
ahn  Atlantibacter hermannii
Pathway
ahn03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ahn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    NCTC12129_02141 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ahn03400]
    NCTC12129_02141 (mfd)
Enzymes [BR:ahn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     NCTC12129_02141 (mfd)
DNA repair and recombination proteins [BR:ahn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      NCTC12129_02141 (mfd)
SSDB
Motif
Pfam: TRCF DEAD MFD_D3 UvrB_inter Helicase_C CarD_TRCF_RID ResIII UB2H Cas3-like_C_2 ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: VDZ73034
LinkDB
Position
1:complement(1981153..1984599)
AA seq 1148 aa
MSEQYRYSLPAKPGDQRQLGELTGAACATEVAEMAERHAGPVVLIAPDMQNALRLHDEIR
QFTDSMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPAMQRGVLILPVNTLMQRVCPH
SFLHGHALVMKKGQRLSRDALRSQLEQAGYRHVDQVMEHGEYATRGALLDLYPMGSVQPY
RLDFFDDEIDSLRLFDVDTQRTLEEVEAINLLPAHEFPTDKNAIELFRTNWRDRFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPALFSYFPANTLVVNTGDLESSAQRFWADTV
ARFENRGVDPMRPLLPPEQLWLRTEELFTELKNWPRVQLKTEVLPEKAANTNLGYQPLPE
LSVKAQQKAPLDDLRKFLESFSGPVVFSVESEGRREALSELLARIKIAPKKLYRFDEASA
NGRYVILGSAERGFIDTRRQRALICESDLLGERVARRRQDNRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGITAEYLILMYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYSQRAAKTGFAFKHDREQYQLFCDTFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIELLSRFRSAKEQAQVLEQAAEGKVDILIGTHKLLQNDVRW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAADRLATLVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTGDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EGQSGQMETIGFSLYMELLENAVDALKEGREPSLEDLTNQQTEVELRMPSLLPEDFIPDV
NTRLSFYKRIASAKKPGELDEIKVELIDRFGLLPDAARNLLDIARLRQQAQKMGIRKIEA
HDKGGVIEFAEKNHVDPVWLIGLLQKSPQHFRLDGPTRLKFFQDLSERKNRMEWVSQFMT
QVQENAVA
NT seq 3447 nt   +upstreamnt  +downstreamnt
atgtctgaacaatatcgctattcattgcccgccaaaccgggcgatcaacgtcaactgggc
gaactcactggcgcggcctgtgccaccgaagtcgcagaaatggcggaacgccacgcggga
ccggtcgtactgatcgcgccggatatgcaaaacgccctgcgcctgcatgatgaaatccgt
cagtttaccgacagcatggtgatgaatctggcggactgggaaacgctgccgtatgacagt
ttctccccgcaccaggacattatctcctcgcgcctgtccaccctgtatcaactgcccgcc
atgcagcgcggcgtgttgattttaccggtcaatacgcttatgcagcgcgtatgcccgcac
agttttttgcatggtcatgcgctggtgatgaaaaaaggccagcgcctgtcgcgtgatgcg
ctgcgcagccagctggaacaggcgggttaccgccatgtggatcaggtgatggaacacggc
gagtacgcgacccgcggcgcgctgcttgatctgtaccccatgggcagcgtacagccctac
cgtctcgacttttttgacgacgaaatcgacagcctgcgcctgttcgacgtggatacccaa
cgaacgctggaagaagtcgaggccatcaatctcctgccggcgcacgagtttcctacagat
aaaaacgcgattgaactgtttcgcaccaactggcgcgaccggtttgaggtgaagcgcgat
gccgagcatatctatcagcaggtcagcaaagggacactgcctgccggtatcgaatactgg
cagccgctgttttttagcgagccgctccctgcgctgttcagctatttcccggccaatacc
ctcgtcgttaataccggcgatctggaatccagcgcgcaacgtttctgggcggatacggta
gcgcgttttgaaaaccgtggcgtcgatccaatgcgcccgctactgccaccggaacagttg
tggctgcgcactgaggaactgttcaccgagctgaaaaactggccgcgggtacaactcaaa
acggaagtgttgccggaaaaagcggccaacaccaacctcggttaccagccgctgccggaa
ctgtcggtcaaggcgcagcaaaaagccccgctggacgatttacgcaagtttctggagtct
ttcagcggtccggtggtgttttctgtggaaagcgaaggccgccgcgaagccctgtccgaa
ctgctggcgcggattaaaatcgcgccgaagaaactctatcgcttcgatgaagccagcgct
aatggccgctacgttattctgggctccgccgagcgtgggtttattgatacccgccgccag
cgggcgctgatttgcgaaagcgatttgctgggcgagcgtgtggcgcgccgtcgtcaggat
aatcgccgcaccatcaatccggacacgctcatccgtaaccttgcagaactgcatatcggg
caaccggtggtgcatcttgagcatggcgtgggccgttatgcgggcatgactaccctggaa
gccggtgggatcaccgcagaatatctcatcctgatgtatgccaacgacgccaaactgtat
gtgccggtgtcgtcgctgcacctgatcagccgctatgccggtggcgcagaagagaatgcg
ccgcttcataaactgggtagcgatgcctggtcgcgggcgcgtcagaaagcggcggagaaa
gtgcgcgatgtggcggcggaactgctggatatctactcgcaacgcgcagcgaaaaccggc
tttgcgttcaaacatgaccgcgagcaatatcagttgttctgtgacacattcccgtttgaa
accacaccggatcaggctcaggccatcaatgcggtgttgagcgacatgtgccagccgtta
gccatggatcgtctggtctgcggtgacgtgggttttggcaaaaccgaagtggcaatgcgt
gcggcgtttctggcggtagaaaacaataagcaggtggcggtgctggtgcccactactctg
ctggcgcaacagcatttcgacaatttccgcgaccgttttgccaactggccggtgcgcatt
gagttgctgtcgcgctttcgtagcgccaaagaacaagcccaggtgctggagcaggcagcg
gaaggcaaggtcgatattctcatcggcacccataagctgctgcaaaacgacgtgcgctgg
aaagatttgggcctgctgattgtcgatgaagagcaccgcttcggggtgcgccataaagag
cgcatcaaagcgatgcgggccgatgtggatattttaaccctgaccgccacgccaatcccg
cgaaccctgaatatggccatgagcggcatgcgcgatctgtcgatcatcgctacgccgccg
gcccgccgcctggcggtaaaaaccttcgtacgcgaatacgacagtctggtggtgcgcgaa
gctatcctgcgtgagatcctgcgcggcggccaggtgtactacctgtataacgatgtcgaa
aacatccagaaagccgccgacaggttggcaacgctggtgccggaagcgcgtatcgccatc
ggccacggccaaatgcgcgaacgcgaactggaacgggtgatgaatgatttccatcatcag
cgctttaacgtgctggtgtgcaccaccatcatcgaaaccggtatcgatattcctaccgcc
aataccatcattattgagcgtgccgatcattttggcctggcgcagctccatcagttgcgt
ggccgcgtggggcgctcgcaccatcaggcctatgcctggctgctgacgccgcatcccaaa
gcgatgaccggtgacgcgcaaaaacgccttgaggctatcgcctcgctggaagatttaggc
gcgggctttgcactggcgacccacgatctggaaattcgcggcgcgggcgaattgttaggc
gaaggccagagtgggcaaatggaaaccattggcttctcgctgtatatggagctactggaa
aacgcagtagacgcgcttaaggaaggccgtgaaccgtcgctggaggatctcaccaaccag
cagaccgaagtggagctgcgtatgccgtcgctgctgccggaagatttcatccccgatgtt
aatacgcgcctgtcgttttacaagcgtatcgccagcgccaaaaaacccggcgaactggac
gagatcaaagtggaactgattgaccgtttcggcctgttgccggacgcggcgcgcaatttg
cttgatatcgcccggttgcgccagcaggcgcaaaaaatgggcatccgcaaaatcgaggcg
catgataaaggcggcgtgattgaattcgctgagaagaatcatgttgacccggtgtggctg
attggcctgctgcaaaaatcgcctcagcatttccgcctcgacggcccgacgcgtctgaaa
tttttccaggacttaagcgagcgtaaaaaccgcatggagtgggtcagccagtttatgacc
caggtacaagaaaacgccgtcgcgtaa

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