Atlantibacter hermannii: NCTC12129_02887
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Entry
NCTC12129_02887 CDS
T05790
Symbol
rnb_2
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ahn
Atlantibacter hermannii
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ahn03016
]
NCTC12129_02887 (rnb_2)
Enzymes [BR:
ahn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC12129_02887 (rnb_2)
Transfer RNA biogenesis [BR:
ahn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NCTC12129_02887 (rnb_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
PilZ
ODP
OSR1_C
Motif
Other DBs
NCBI-ProteinID:
VDZ73770
LinkDB
All DBs
Position
1:2627490..2628938
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AA seq
482 aa
AA seq
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MTLARHNLEREAPNGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALYVEQGADGSL
VLTVAIADPTAWIAPGSKLDGMAKVRAFTNYLPGFNIPMLPRELSDDLCSLRAHESRPAL
ACRMTIQADGAIADDIHFFAAIVESKAKLAYDNVSDWLENRGDWQPESEAIAQQIRLLQQ
VCERRNAWRHQHALVFKDRPDYRFVLGEKGEVLDIIAEPRRIANRIVEESMIAANVCAAR
VLRDKLGFGIYNVHAGFDPANTEQLAALLKSHGMHVDAQEVLTLEGFCKLRRELDAQPTG
FLDSRIRRFQSFAEISTEPGAHFGLGLEAYATWTSPIRKYGDMINHRLLKAIIKGESAER
PLDDVLTPMAERRRANRMAERDVGDWLYARFLQDKAGTDTRFAAEIIDISRGGMRVRLVD
NGAIAFIPAPFLHAVRDELVCSQENGTVQIKGEVVYKVTDVIDVTIAEVRMETRSVIARP
AA
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
gtgacgctggcgcgccacaatctcgaacgcgaagcgccgaacggcgtagcgaccgagatg
ctggacgaaggcctggtgcgtgaagatctgaccgcgctggatttcgttaccatcgacagc
gccagcacagaagatatggatgacgccctgtacgttgaacaaggcgcggatggcagcctg
gtgttgacggtagccattgctgacccaaccgcctggatcgcccccggtagcaaactggac
ggcatggcgaaagttcgtgctttcaccaactatctgcctggattcaacatcccgatgctg
ccgcgtgagctgtctgacgatctctgctcgctgcgcgcccatgagtctcgtccggcgctg
gcgtgccgcatgaccattcaggcagatggcgcgattgccgacgatattcatttcttcgcc
gcgattgtcgaatccaaagcgaaactggcctatgacaatgtctccgactggctggaaaac
aggggtgactggcagccggaaagcgaggcgattgctcaacagatccgattactgcaacag
gtatgcgagcgccgcaacgcctggcgccaccagcatgcgctggtcttcaaagaccgtccg
gattaccgctttgtgctgggtgaaaaaggcgaagtgctggatatcatcgccgaaccacgt
cggattgcgaaccgcatcgttgaagagtcgatgattgctgctaacgtctgcgccgcacgg
gttctgcgcgataaactgggcttcggtatttataacgttcacgcgggcttcgatccggcg
aacactgaacagctggcggcactgctcaaatcccacggcatgcatgtggatgctcaggag
gttctgacgctggaaggcttctgcaaactccgccgcgaactggatgcgcagccgaccggg
ttcctggacagccgtattcgtcgtttccagtcctttgcggaaatcagcaccgaacccggc
gcgcattttggtttaggcctggaagcctacgcgacctggacttcgccgattcgtaagtac
ggcgatatgatcaatcaccgtctgctgaaagcgattatcaaaggcgaaagcgccgagcgt
ccgctggatgatgtgttaacgcctatggcagaacgccgtcgcgctaaccgcatggcggaa
cgcgatgtcggcgactggctgtatgcccgcttccttcaggataaagcaggaacggatacc
cgtttcgcggcggaaatcattgatatcagccgcggcggaatgcgcgtgcgtctggtggat
aacggcgccatagcgtttattcctgcccccttcctgcacgccgttcgcgacgagctggtt
tgcagtcaggaaaacggtacggtgcaaattaaaggcgaagtggtttataaagtgacagat
gtgattgatgtcactattgccgaagttcgaatggaaacgcgcagcgtcatcgcacgccct
gcggcctga
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