Atlantibacter hermannii: NCTC12129_02907
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Entry
NCTC12129_02907 CDS
T05790
Symbol
topA_2
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ahn
Atlantibacter hermannii
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahn03032
]
NCTC12129_02907 (topA_2)
03400 DNA repair and recombination proteins [BR:
ahn03400
]
NCTC12129_02907 (topA_2)
Enzymes [BR:
ahn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NCTC12129_02907 (topA_2)
DNA replication proteins [BR:
ahn03032
]
Prokaryotic type
DNA Topoisomerases
NCTC12129_02907 (topA_2)
DNA repair and recombination proteins [BR:
ahn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NCTC12129_02907 (topA_2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
CK_II_beta
MetOD1
Motif
Other DBs
NCBI-ProteinID:
VDZ73790
LinkDB
All DBs
Position
1:complement(2643382..2645988)
Genome browser
AA seq
868 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSTQKKSADSASTKAAKTGK
KVKKDERGALVNRMGVDPWHNWEAQYEVLPGKEKVVSELKALAEKADHIYLATDLDREGE
AIAWHLREVIGGDDTRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGY
MVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWEVDAALTTPKGDALQVE
VTHQNDKPFRPVNREQTMAAVSLLEKARYTLLEREDKPTSSKPGAPFITSTLQQAASTRL
GFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVSMVRDYIKDEFGKKYLPESANQYAS
KDNSQEAHEAIRPSDVNVVADALKDMESDAQKLYQLIWRQFVACQMTPAQYDSTTLTVEA
GDFRLKARGRTLRFDGWTKVMPALRKGDEDRTLPAVEAGDALSLVELTPAQHFTKPPARF
SEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFREL
MNYDFTAQMESSLDQVANHQAEWKAVLDNFFGDFTRQLDTAEKDPEEGGMRPNQMVLTSI
DCPTCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEILNVLEGDDAETNALR
AKRRCQKCGTAMDSYLIDPKRKIHVCGNNPTCDGYEIEEGEFRIKGYDGPVVECEKCGSE
MHLRMGRFGKYMACTNEECKNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAA
GVFLAANTFPKSRETRAPLVEELFRFRDRLPEKLRYLADAPQKDPEGNPAVVRFSRKTKQ
QYVASEKEGKATGWSAFFVDGKWVEGKK
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgttgagtccccggcaaaagccaaaacgattaacaagtat
ctcggcaatgactacgtggttaagtccagcgtcggtcatatccgtgatttgccgaccagc
ggatcaacccagaaaaagagcgctgactctgcctccaccaaagcggccaaaaccggcaaa
aaagtcaaaaaggatgaacgcggtgcgttagtaaatcgcatgggcgtcgatccgtggcat
aactgggaagcccagtacgaagtgctgccgggtaaagagaaagttgtctctgaactgaaa
gcgttagctgaaaaagctgaccatatctatctcgcaaccgaccttgaccgcgaaggggaa
gccattgcgtggcacctgcgggaagtgatcggcggcgacgacacccgctacagccgcgtg
gtgtttaatgaaattactaaaaatgcgattcgtcaggcgtttgaaaagccgggcgaactg
aatattgaccgggttaacgctcagcaggcgcgtcgttttatggaccgcgtagtgggttat
atggtctctccgctgctgtggaaaaagatcgcccgtgggctttctgctggtcgtgtgcag
tccgttgcagtgcgtctggtggtggaacgcgaacgtgaaatcaaagcgttcgtaccggaa
gagtactgggaagttgacgccgcgttgaccacgccgaaaggcgatgcgttgcaggttgag
gtcactcatcagaacgacaagccgttccgtccggttaaccgtgaacaaaccatggcggcg
gttagcctgcttgagaaagcacgttacaccctgcttgagcgtgaagataagcccaccagc
agcaaacctggcgcgccgttcatcacctccactctgcagcaggccgccagcacgcgtctc
ggctttggcgtgaagaaaaccatgatgatggcccagcgtctgtatgaagcgggttatatc
acttatatgcgtaccgactcgaccaatctgagccaggacgccgtgagcatggtgcgcgac
tatattaaagacgaattcggcaaaaaatatttgccggaatcggcgaaccagtacgccagc
aaagacaactctcaggaagcgcacgaagcgattcgtccttctgatgtcaatgtagtggcg
gacgcgctgaaagacatggaaagcgacgcgcagaaactgtatcagctgatttggcgtcag
tttgtggcctgtcaaatgacaccggcgcaatatgactccaccacgctgacggtggaagcg
ggcgatttccgtctcaaagcacgtggccgcacgctgcgcttcgacggctggacgaaagtc
atgcctgcgctgcgtaaaggcgacgaagatcgtacgctgcctgccgttgaggctggcgat
gccctgtcactggttgaactgacacctgctcagcactttaccaaaccgccagcgcgtttc
agcgaagcgtccttagttaaagagcttgaaaaacgcggtatcggtcgtccgtcaacctat
gcatccatcatttccaccattcaggatcgcggttatgtgcgggtggaaaaccgccgtttc
tacgcggaaaaaatgggtgaaatcgtcaccgatcgcctggaagaaaacttccgcgaactg
atgaactacgatttcaccgcacagatggaaagcagccttgatcaggtagcgaaccatcag
gcggaatggaaagcggtgcttgataacttctttggcgattttacacgccagttagatacc
gccgaaaaagatccggaagagggcgggatgcgcccgaaccagatggtgctaaccagcatt
gattgcccgacctgtggccgtaaaatggggatccgcaccgccagcaccggggtattcctg
ggctgttccggctatgcgctgtctccgaaagagcgctgcaaaaccaccatcaacctggta
ccggaaaacgagatcctcaacgtgctggaaggcgatgacgccgaaaccaacgcgttgcgc
gccaaacgccgttgccagaaatgcggcaccgcgatggacagttacctgatcgatccgaaa
cgcaaaatccatgtctgcggcaataatccgacctgcgacggttatgaaatcgaagagggc
gaattccgcatcaaaggctatgacggcccggtagtggaatgtgagaagtgcggttctgaa
atgcacctgcgtatgggacgtttcggtaagtacatggcctgcaccaacgaagagtgcaaa
aatacccgtaagatcctgcgaaacggtgatgttgcgccgccgaaagaagatccggttccg
ttgcctgaactgccgtgcgaaaagtcagatgcgtatttcgtattgcgcgatggtgccgca
ggcgtcttcctggctgcaaacacgttcccgaaatcgcgcgaaacccgtgcgccgttagtg
gaagagctgttccgattccgcgatcgactgccggaaaaactgcgctatctggcagacgcc
ccgcagaaggatccggaaggcaacccggcggtggtgcgctttagccgtaaaacaaaacag
cagtatgtggcctcggaaaaagagggcaaagccacgggctggtctgcgtttttcgtggat
ggcaagtgggtggaaggtaaaaaataa
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