Atlantibacter hermannii: NCTC12129_03038
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Entry
NCTC12129_03038 CDS
T05790
Symbol
hpmA
Name
(GenBank) putative adhesin/hemagglutinin/hemolysin
KO
K15125
filamentous hemagglutinin
Organism
ahn
Atlantibacter hermannii
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ahn00536
]
NCTC12129_03038 (hpmA)
Glycosaminoglycan binding proteins [BR:
ahn00536
]
Heparan sulfate / Heparin
Microbial pathogens
NCTC12129_03038 (hpmA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fil_haemagg_2
TPS
Fil_haemagg
PT-VENN
Motif
Other DBs
NCBI-ProteinID:
VDZ73915
LinkDB
All DBs
Position
1:complement(2758976..2767594)
Genome browser
AA seq
2872 aa
AA seq
DB search
MVAGNPWLGKGEARVILNEVNSRDPSRLNGYVEVAGKQAQVVIANPSGITCNGCGFINAN
RATLTTGQPQLNNGALTGYNVERGEINIEGKGLDTSGANYTDIIARSVNVNAGIWGNELN
VTTGRNLVDAAHERIDKTTDDPATRPQMALDVASLGGMYAGKIRMVGTESGVGVRNAGNI
GAQAGSVTLTADGRIENSGNISGKGDTLLAASGGIDNSGAIYAGGSASVQSGGEVNNRGS
IVARNHTRVQAASLTGNSQGILAAGVQDDGKLAAQGNLDLSASGQLAAHGQTLAGGALIA
RGQGIDLSGSKTQGDTVLLDAGSGELTTASAQVSARELAARSATRLNNDGGQVTAEALSV
QTNTLSNQKGRIVQTGSGNLTLDLPGDVNNNAGQIAANGNVALRARSLTNQSGQLIAAQN
GSLSVDTGSVLDNRDGTLAASGSVRAQTGTLNNDGGLISASAGQSDIVSRGAVSNRKGRV
ESSGALTLNAASVDNTAGEMVASGATLQLNNGALNNQSGKLLAQGDMRVDSGALDNTAGL
IQATGNTRIDTHGATLTNRNSGETGGISSSGTLTLATGDMDNQHGVMVSGGALDLTGNAV
DNRNGLLGSEQAVTARVNTLTNGGGSLKSGGAMNLDAATLDNANGILGAGNDLSIHAGKL
DNQQGVMVSGGRGAIAAGTLDNRAGQLAAQQALTLGGDSINNDEGGLIQSGDALTVEAGE
LTNRRSGDKGGITSLGEMTLTTGTFANNDGVTLAGKSLTLNSGTLDNTSGDLVATGALTL
DLNGELNNQSGLMQGGSVALDTTGHAFTNLDGTLNSLGSLSLNSGALNNQNGTLAAKGPF
ELSAASVDNRNGGRIIGESATTLESGALQNGGGQIQSVGDLMLDVAKGAIDNVSGLIRSG
AQLTVNAVSFANQNTQDKNQGVEAASATFNTGTLNNQRGVILTDKALTITNGGLLDNTDG
ALASAGNLTLNGAKLDLLNTGGVAKAGERLDVDGWRIGGDGDLLSLGDMRLHSDSGLING
GTIIANDTLHITTPGDIANSGKLLAGQQLDLQSGNLTNAESGEISAGKNSLNITGTLTNY
GLIDGGYTRIDANTLTNQGTGRIYGDAIGINTVTFNNLAANGKAATLAGREWVGIATDTL
NNRDHALIYSGGDMVIGGKLDDNGNVTGRAEVINNHSATIESAGNMWITAGQINNINDHF
STERVTVSQEQVTEYQHKGSPNRWNANDEGVYVNRKSADGLRNLNTPEDTGSNNDNFNQY
EYQRTVEETRIKESDPAKILAGGNLILAGDQLFNDKSQVVAGGTLSTSGMANGVLNPDVP
GERYTTDVGTVTHYYRIRHKGSDEQGRDRTDYKPPTVIQEILLKPGQLISKGDVQGSNIT
LAPLTLPATDVTIGEAGAVTGKVDAVSRAPWQQTVDDGEPVKPLPGQRFEVTPGDYAIRI
VGPNTVLPDNSLFKINPSASGSYLVETDPRFTNEKLWLGSDYMQNALSQNGDGKLKRLGD
GFYEQRLIREQVVELTGYRYLDGYTNDEEQFKALMDGGIAFGKKYALKLGVALTPEQMSL
LTGDIVWLVNTDVKMPDGSMQTVLMPQVYAKVKPGDISGSGSLIAGNNVVMKLDGDLFNR
GTIAGRRVLQLDADNITNQSGMIQGADARIAARTDINNIGGVLQGTDSLLVSAGRDINAT
TTLRNAESVAGENRFTRTTIDSVSGIYVQGEDGKLGLKAGRDLNLTGAQVVASGDNAQAQ
LVAGRNITLNDVTTGRSDKLIWDADNTLSQSETRSVGSEVVGRGAVTLVAGNDIQARGAT
VSSDQALTLNAGNDINLLAGQNTQHLDERHKVVGSSGWLSKTTTRTHDVVSGQTAQGSEL
SGNTVNVTAGRDLALRGGSIAGSGDVALLAGRDMTIGTAQERNEEMHLRQEKKSGLMSSG
GIGFSVGSQSVKTTDTGANVTQAGSTVGSVNGDLTLGAGNRLAVTGSELVAGQDMTLTGK
NVEITAAQNQNRQTHIVEQKTSGLTLALSGTAGSALNSVVTATQNAKSAGNSRLQALQGV
SAALSGVQAAQAVRMDAAQGDVANNTNTVGVSLSWGSQSSKSTQQSGQTTAQGSTLNAGR
NLLVQATGSGAPGTDGDLTIQGSQIKAGNNATLAANRDITLQSAENTQWLKGENESRGGS
VGVGIGAGSGGWGINVSASVNKGSGNERGNGTRYTETTVDAGRQVTLMSGRDTTLVGAQV
NGETVKADVGRNLTLISQQDSDRYDSRQQNASAGGSFSFGSMSGSASASLSRDKMHSNYD
SVVEQTGIFAGEGGYDIRVGEHTQLDGAVIGSTAGADKNRLDTGTLGFSDIQNRAEYKVE
HQSVGFSTGGSIGSQFAGNLANSLLVGANHSGEADSTTRAALSDGTLIIRDRQNQQQDTA
LLSRDVEHANQTLSPIFDKEKEQNRLQQAQLIGQIGNQVSDIARTEGSIRATEAANAARE
NASAQDLLAAKAAWEKAHPGQTASSNDILGQVYQTAYNDALKASGFDTGGQYQRAIQAAT
AAVQGLAGGDIKAALAGGAAPYIAQAIGHRTDLSQEGKVAAHAVVNAALALAQGQNALAG
AAGAATAEVVGLIANEMYGKRAEELSDSQKQVVSTLATLAAGLAGGLVDDSGASAISAAQ
AGKTTVENNLYGGTELSHEVKVRDHGADVLSCSDDPSGEACQRGIAANKAYAGALATGSV
ALLPGSAQAMWMLGFGANSGIQYWDTGEVNPVNAIVAGWVNVFTMGNGWKGTVGWNAAGG
AFANALNGDDPLTGAITNGGGAWIGYGVGNYLVKPGVNAIGKWYTGGWDPKFNPTLLKYT
EITGQFGISKEMLPSQIPAAAGNIGGSVTSEYMGTVIQDKKEAMEKQLMEKK
NT seq
8619 nt
NT seq
+upstream
nt +downstream
nt
atggtggcaggcaacccgtggctcggcaaaggcgaagcccgggtcattcttaacgaagtg
aattcccgcgatccaagccgcctcaatggctatgtggaagtggccgggaagcaggcgcag
gtggtcattgccaacccgtcaggcattacctgtaacggctgcggattcattaacgccaac
cgcgccacgctcaccaccggccagccgcaactcaacaacggcgcgctgaccggctataac
gtcgagcgcggcgagataaacattgaaggcaaggggctggatacttccggcgccaactat
accgatatcatcgcccgctcggtcaatgtgaatgccgggatctggggcaacgaacttaac
gtcaccactggtcgcaacctggtggacgcggcgcacgagcgcattgataaaaccactgac
gatccggcgactcgtccgcaaatggcgctggacgtagccagccttggcggcatgtacgcc
ggtaaaatccggatggtgggcaccgaaagcggcgtcggggtacgcaacgccgggaacatc
ggcgcgcaggcaggcagcgtcacgctgacggcggatggccggattgaaaacagcggcaac
atcagcggcaaaggcgataccctgctcgcggcatcgggcggtattgataacagcggcgcg
atctacgcgggcggtagtgccagtgtgcagagcggcggcgaagtcaataaccgcggctcg
atagtggcgcgcaatcatacccgggtgcaggccgccagcctgacgggcaacagccagggc
atactggcggcaggcgtacaggatgacggcaaactcgccgctcagggaaacctggattta
agcgccagtgggcaactggccgcgcatgggcaaaccctggcggggggcgcgctgatcgcc
cgggggcaggggatcgacctcagcggcagcaaaacccagggcgatacggtgctgcttgat
gcgggctccggcgagctgaccactgccagtgcgcaggtcagcgcccgggagctggccgcc
cgcagtgcaacacgcctgaataacgacggcggccaggtgacagccgaggcgttgtccgtc
cagacgaacacgctgtcaaaccagaaagggcgtatcgtgcagaccggcagcggcaatctc
acgctggatctgccgggagacgtcaacaataacgccggacagatcgccgcaaatggcaac
gtggcgctgcgtgcccgttcgctcactaaccagagcgggcaactcattgccgcccagaac
ggcagcctcagcgtcgataccggttccgtgctggataaccgtgacgggacgctggcggcc
agcggcagtgtgcgggcgcagaccgggacgctgaataacgacggtggcctgatctcggcc
tctgccggacaatccgacatcgtcagccgtggcgcagtcagcaaccgcaagggacgggtc
gaaagtagcggcgcgttgacgctgaacgccgcgagcgtggacaacacggcgggagagatg
gtcgccagcggcgcgaccctgcaactcaacaacggcgcgctgaataaccagtccggcaaa
ctgctggcacagggcgatatgcgcgtagacagcggcgcgctggataacacggcggggctg
atccaggcgaccggcaatacccgaatcgacacccacggcgcgacgctgaccaaccgcaac
agcggtgaaaccggcggcatcagcagcagcggcacgctcacgcttgccaccggagatatg
gataaccagcacggcgtaatggtgagcggtggcgcgctggatcttaccggcaatgccgtg
gacaaccgtaacggcctgttgggttcggagcaggcggtcaccgcccgggtcaacaccctg
accaacggcggcggatcgctgaaatccggcggcgcgatgaaccttgatgccgcgacgctc
gacaatgccaacgggatcctcggcgcgggtaacgatctcagcatccacgccggaaaactc
gataaccagcagggcgtaatggtcagcggtggacgcggcgcgattgcagcgggcaccctc
gacaaccgcgcgggccaactggcggcacagcaggcgctgacgcttggcggcgacagtatc
aataatgacgagggcggtctgatccagagcggcgacgcgcttaccgtcgaagcaggcgaa
ctgactaaccgccgcagcggcgataaaggcggcatcaccagcctcggtgagatgacgctg
accaccggcacctttgccaataacgacggcgtcacgctcgccggtaaaagcctgacgctc
aacagcggtacgctggataacacctccggcgacctggtggcgaccggggcgctgacgctg
gacctgaacggtgaactcaataatcaatccggcctgatgcagggcggcagcgtggcgctg
gataccaccggacacgccttcaccaatctcgacggcaccctgaacagcctcggctccctg
tccctgaacagcggcgcgctgaataaccagaacggcaccctggcggccaaaggcccgttc
gaactgagcgccgccagcgtggataaccgcaatggcggacgcattatcggcgaatccgcg
accaccctcgagagcggcgcgctgcaaaacggcggcggccaaatccagtcggtgggcgat
ctgatgctggacgtcgccaaaggcgctattgataacgtctccggcctgatccgcagcggc
gcacagctcacggttaacgccgtcagcttcgccaaccagaatacccaggataaaaatcag
ggtgtcgaagccgcctcagccacattcaacaccggcacgctgaataaccagcgcggcgtg
atcctgacggataaagcgctcaccatcaccaatggcggcctgctggataataccgacggc
gcgctggcatctgcaggcaacctgaccctcaacggcgcgaagctggatctgctgaatacc
ggcggggtcgccaaagcgggcgaacggctggatgtggacggctggcgcatcggcggcgac
ggcgatctgctgtcgctgggggatatgcgcctgcacagcgacagcggcctgattaacggt
ggcacgattatcgccaatgacaccctgcatatcaccacgccgggtgatatcgctaacagc
ggtaaattgctggcggggcaacaacttgatctgcagagcggtaacctgacgaacgccgaa
agcggggagatcagcgccgggaaaaacagcctcaacattaccggcacgctaaccaactac
ggtctgatcgacggcggctatacgcggattgatgccaacaccctgactaaccaggggacc
gggcgcatctacggcgacgccatcggcatcaacaccgtcaccttcaataacctggcggcc
aacggcaaagccgccacgctggccggacgcgaatgggtgggtatcgccaccgatacgctc
aataaccgtgaccacgcgctgatctacagcggcggcgacatggtgattggcggcaagctc
gatgataacggtaatgtgacgggacgtgcggaggtgattaacaaccacagcgcgaccatc
gaatccgcgggcaatatgtggatcactgccgggcagatcaacaatatcaacgatcatttt
tccaccgagcgggtgaccgtttcccaggaacaggtgacggaataccaacataaaggatcg
ccgaaccgctggaacgccaacgatgaaggggtttacgttaaccgtaaatccgccgatggc
ttgcgcaacctgaataccccggaagacacgggctccaataacgacaacttcaatcagtat
gaataccagcggacggttgaagagacgcgcattaaagagagcgatccggcgaaaatcctg
gccggaggcaatttaatcctcgcgggcgaccaactgttcaacgataaaagccaggtggtg
gcgggcggcacgctcagcaccagcggcatggcgaatggcgtgctcaacccggatgtacct
ggcgagcgctacaccaccgatgtgggcaccgtgacgcactattaccgtattcgccataaa
gggtctgacgagcagggccgcgatcgcaccgattacaagccaccgacggtgattcaggag
atcctgctcaagcccggccagcttatcagcaagggcgacgtacagggcagtaacattacg
cttgcgccgctcaccttacccgcaaccgatgtgaccatcggcgaagcgggcgcggtgacc
ggtaaagtggatgccgtctcccgtgcgccctggcagcagactgtggacgacggtgagccg
gtgaagccgctgccgggccagcgctttgaagtgacacccggtgactacgcgatccgtatc
gtcgggccaaacacggtgctgccggataacagcctgtttaaaatcaacccgtccgccagt
ggatcgtatctggtggaaaccgatccgcgctttaccaacgagaaactgtggctgggcagc
gactatatgcaaaatgccctcagccagaacggcgacggcaaactcaaacgtctgggcgac
ggtttttacgagcagcgcctgatccgtgagcaggtggttgagctgaccgggtatcgctat
cttgatggctataccaatgatgaagagcagtttaaagcgctgatggacggcgggatcgcc
ttcgggaagaaatacgccctgaaactcggtgtcgccctgacgccggagcagatgtccctg
ctgaccggcgatatcgtctggctggtgaataccgacgtgaaaatgccggatggctcaatg
cagacggtgctgatgccgcaggtttatgcgaaggtgaaaccgggcgatatcagcggttca
ggctcgctgatcgccggtaacaacgtcgtgatgaagctcgacggcgatctctttaaccgg
ggcaccatcgccgggcggcgggtgctccagcttgacgcggataacatcaccaaccagagc
gggatgatccagggggcggacgcccgtatcgccgcgcgcaccgatatcaataacatcggc
ggcgtattgcagggcacggacagcctgctggtcagcgccgggcgcgatatcaacgccaca
accacgctgcgcaacgcggaaagcgtggcgggggaaaaccgctttacgcggaccactatc
gacagtgtttccgggatttacgttcagggcgaagacggcaagcttgggctgaaagccggg
cgcgatctcaatctgaccggcgcgcaagtggtcgccagcggcgataacgcccaggcgcaa
ctggtggcgggccgcaatatcacgctcaatgatgtgaccaccgggcgcagcgacaaactg
atctgggatgcggataacacgttgtcccagagcgagacgcgcagcgttggcagcgaagtg
gtaggccggggtgccgtgacgctggtcgcgggtaacgatatccaggcgcggggcgcgacg
gtgtcgtctgaccaggcgcttacgcttaatgctggtaacgacatcaatctgttggcagga
caaaacacgcagcacctggacgagcggcacaaagtggtcggcagcagcggctggctgtcg
aaaaccaccacccgtactcatgacgtggtgtcaggccagactgcgcagggcagcgagttg
agcggcaataccgttaacgtcactgccgggcgcgacctggccctgcgcggcggcagcatc
gcgggcagcggcgacgtggcattgctggcaggccgcgatatgaccatcggcacggcgcag
gaacgcaacgaagagatgcatttaagacaggagaaaaaatccggtctgatgagctcaggc
ggcatcggtttcagcgtcggttcacaaagcgttaagaccaccgataccggcgcaaacgtg
acccaggcgggcagtaccgttggcagcgtcaatggcgacctgactctgggcgcgggcaac
cgtcttgccgtgacgggctcggaactggtggcgggtcaggatatgacccttaccggtaaa
aacgtggagattaccgccgcgcaaaaccagaaccgccagacccatattgtcgagcagaaa
acctccgggttgaccctggcactgtcgggcacggcgggcagcgccctgaacagcgtagtc
acagcgacccaaaatgcgaaatcggcaggcaacagccgtctccaggcgctccagggcgtc
agcgccgccttgtcgggcgttcaggcggcgcaggccgtgaggatggatgccgcgcagggg
gatgtggcgaataacaccaataccgttggcgtaagcctctcctggggcagccagtcgtca
aaatccacccagcagagcgggcagactaccgcgcagggcagcacactgaatgcgggccgt
aacctgttggtacaggccaccggcagcggcgcgccaggcacggacggtgatttgaccatc
cagggcagccagatcaaagcgggcaataatgcgacgctggcggcaaaccgcgatatcacg
ctgcaatcggcggaaaacacccagtggctgaagggcgaaaatgaaagccgcggcggcagc
gtgggcgtgggtatcggtgccggttccggcggctgggggattaacgtctccgccagcgtg
aataaaggcagcggtaacgaaaggggtaacggcacacgctataccgaaaccactgtggac
gccggtcgtcaggtgacgctgatgagcgggcgtgacaccaccctggtcggcgcacaggtt
aacggcgaaacggtgaaagccgatgtaggccgcaacctgaccctgatttcgcaacaggac
agcgatcgctacgattcgcgccagcagaatgccagcgcgggcggcagcttcagttttggc
tccatgagcggttcggcgagcgccagcctcagccgcgataagatgcacagcaactacgat
tcggtggttgagcaaaccggtatttttgccggggagggcggttacgatattcgcgtgggc
gagcacacccaactggacggcgcggtgattggttccaccgccggggcagataaaaaccgt
ctcgataccggaaccctgggctttagcgatattcagaaccgtgccgaatacaaggttgaa
catcagagcgtcggcttcagcaccggcggcagtatcggcagccagtttgccggtaatctg
gcgaacagcctgctggtgggggccaaccatagcggcgaggccgacagcaccacccgtgcg
gcgctgtctgacggaaccctgattatccgcgatcgacagaaccagcagcaggataccgcg
ctgttaagccgggatgtcgaacacgccaatcagacgctgtcgccgatttttgataaagag
aaagagcagaatcgtctgcagcaggcgcaactgattggccagatcggcaatcaggtttct
gatattgcccgtaccgaaggcagcatccgcgctaccgaggcggcgaacgcggcgcgggaa
aatgcttctgcccaggatctgctggctgctaaagccgcctgggagaaagcccatccgggg
caaacggccagcagtaatgatatcctcggccaggtttatcagacggcctataacgatgcg
ctgaaggcgtccgggtttgacaccggcgggcagtaccagcgtgcgattcaggcggcaaca
gcggcggtgcaaggactggcaggcggcgatatcaaagccgcactggcgggcggggctgcg
ccctatattgcccaggcgatcggccatcgcaccgacctcagccaggaaggcaaagtcgcg
gcccatgcggttgtgaatgcagcactggcactggcgcagggtcagaacgcgctggccggg
gctgcgggcgcagccactgcggaagtggtcggtttgattgccaatgagatgtacggcaaa
cgtgcggaagagctcagcgacagccagaaacaggtggtctccaccctggcgacgctggcc
gctggcctggcgggaggcctggtggacgacagcggcgcgtccgcaatcagtgccgcacag
gccgggaaaacaaccgttgagaataacctgtatggcgggactgaactgagccacgaagtt
aaagtgagggatcacggcgcggatgtgctttcctgtagcgacgatccgtccggcgaagcc
tgccagcgtgggattgcggctaataaagcctatgcgggcgcgctggcgaccggcagcgta
gctctgttgccgggtagtgctcaggcgatgtggatgctgggctttggcgctaattccggg
atccagtactgggataccggtgaagtgaatcctgttaatgccatcgtggcgggctgggtg
aatgtgttcactatgggcaacggctggaagggaacggtcggctggaacgctgcgggcggc
gcttttgccaatgcccttaacggtgatgatccgctgactggcgcgatcaccaatggcgga
ggggcctggatcggttatggggtgggtaactacctcgttaagccgggcgttaacgcaatc
gggaaatggtataccgggggctgggacccgaaatttaacccgacgttgctaaaatatacg
gagattacaggccagttcgggatctccaaagagatgttgccaagccaaatccctgccgct
gcgggtaacatcggagggagcgtgacctccgaatatatgggcaccgtgattcaggacaaa
aaagaggccatggagaaacaattgatggagaaaaaatag
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integrated database retrieval system
