Atlantibacter hermannii: NCTC12129_03131
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Entry
NCTC12129_03131 CDS
T05790
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ahn
Atlantibacter hermannii
Pathway
ahn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12129_03131 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahn03019
]
NCTC12129_03131 (rne)
03009 Ribosome biogenesis [BR:
ahn03009
]
NCTC12129_03131 (rne)
Enzymes [BR:
ahn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NCTC12129_03131 (rne)
Messenger RNA biogenesis [BR:
ahn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC12129_03131 (rne)
Ribosome biogenesis [BR:
ahn03009
]
Prokaryotic type
rRNA processing factors
NCTC12129_03131 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
VDZ74007
LinkDB
All DBs
Position
1:2843633..2846599
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AA seq
988 aa
AA seq
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MQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELP
DGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDY
LRQDIGEILIDNPKVLELARQHISALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQR
EVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGG
LIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSH
HVCPRCSGTGTIRDNESLSLSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRDAITA
IETRQGGVRAVIVPNDQMETPHYSVLRVRKGEETKTLSYMLPKLHEEAMAMPSEDEPAER
KRPEEPALATFAMPDIPPAPPETKAVSEAPVNAPVTPQANAPEAAKPGLFSRFISALKSL
FADESAAPAPVVEEPKKEAGEEKQRGDRRNNRRQNNRRDRNDRNDRSNRDNREGREPRES
RDNRAGNEAREPREENRRNRRQAQQQTAEAREVREVVADETEQAKGRDEQQPRRERNRRR
SDDKRQAQQDVKALNREERPEQDAEQEERVQVMPRRKQRQLSQKVRFTDDVVETDVSANI
EPQEAAPAQSTELATIPLPAVVETEATEPEETAENRTDANGMPRRSRRSPRHLRVSGQRR
RRYRDERYPAASPMPLTVACASPEMASGKVWIRYPVAQSAAVEQQEHQEQPVEQTQETAV
TQQAVMEDAILTAPVATEIAATAPVETSHPEVIAAPVDAQPEIIASEDEAVAEQVAQDAK
AVDSSPEEQSAAPVAQEEAVTVEPVVDANIADAPQEQPAPQAHVEAPEVSEEAETVQPQP
VIEPAAAETAPETDVKAAPVVANVAKAHVHPHASAPMTRAPAPEYVPEPPRHSDWVREPF
AFSGKGSAGGHSASHTATAPATRPGQPE
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
gtgcagatcgacaaagaagagcgcggtaataaaggtgcggcactgaccacctttatcagc
ctggcgggcagttatctggtattgatgccgaataacccgcgcgcaggcggtatttcacgc
cgtatcgaaggcgacgaccgtaccgaattgaaagaagcgctggcaagccttgaactgccg
gatggcatgggtcttatcgtgcgtaccgcaggcgtgggcaaatccgccgaagcgctgcaa
tgggatttaagcttccgcctgaaacactgggaagcgatcaaaaaagccgctgaaagccgc
cctgcccccttcctgatccaccaggaaagcaacgttatcgtgcgtgcgttccgcgactat
ctgcgtcaggatattggcgaaatccttatcgataaccctaaagtgcttgagctggctcgc
cagcacatctccgcgctgggtcgtccggatttcagcagcaaaattaaactgtacaccggt
gaaattccgctgttcagccattaccaaatcgaatcgcaaatcgaatctgcattccagcgt
gaagtgcgtctgccttccggcggctccatcgtaatcgacagcacggaagccctgaccgca
atcgacatcaactccgcccgcgcaactcgcggcggcgatatcgaagaaaccgcgttcaac
accaacctggaagcagcagatgaaatcgcccgccagctgcgcctgcgcgatctcggcggc
ctgattgttatcgacttcatcgatatgacgccggtgcgtcaccagcgtgctgtagaaaac
cgcctgcgtgaagccgttcgccaggaccgtgcgcgtattcagatttctcatatttcacgt
ttcggcctgctggagatgtctcgccagcgcctgagcccgtccctgggtgaatccagccat
cacgtttgcccgcgctgtagtggcaccggcaccattcgtgataacgaatctctgtcactg
tcgattctgcgtctcatcgaagaagaagcgctgaaagagaacacgaaagaggttcacgcc
atcgttccggtgccgatcgcctcttatctgttgaacgaaaaacgcgacgccattaccgct
attgaaacccgtcagggcggtgtccgtgccgtgatcgtgccgaacgaccagatggaaacg
ccgcactattccgtgctgcgcgtccgtaaaggcgaagagaccaaaacgctgagctacatg
ctgccgaagctgcatgaagaagccatggcgatgccgtctgaagacgagcctgccgagcgt
aagcgtccggaagaacccgctttagcgaccttcgcaatgccggatattcctcctgcgccg
ccggaaaccaaagcggtgtctgaagcgccggttaacgcacctgtcacgccgcaagccaat
gcgcctgaagctgcgaaaccgggactgttcagccgttttatcagcgcactgaaatctctg
tttgctgatgaatctgccgcgcctgcgccggtagtcgaagagccgaagaaagaggctggc
gaagagaaacagcgtggcgatcgccgtaataaccgtcgccagaataaccgccgcgaccgt
aacgaccgtaacgatcgttcgaaccgcgacaatcgtgaaggccgtgagccgcgtgaaagc
cgcgataaccgcgccggcaacgaggcgcgcgaaccgcgtgaagagaatcgccgtaaccgc
cgccaggcccagcagcaaacggctgaagcgcgtgaagttcgcgaggttgtcgctgatgaa
actgagcaggcgaaaggccgcgatgagcagcaaccgcgtcgcgagcgcaaccgccgccgt
tctgacgataaacgtcaggctcaacaggatgtgaaagcgctgaatcgcgaagaacgtccg
gagcaggatgctgagcaggaagaacgcgttcaggtcatgccgcgccgtaaacagcgtcag
ctgtcgcagaaagtgcgctttactgacgatgtggtcgagacagacgtcagtgcaaacatc
gaaccgcaggaagctgcgccggctcaaagcaccgaactggccactattccgctgccagca
gtggttgaaaccgaagccaccgagccggaagaaaccgctgagaatcgtactgacgctaat
ggtatgccgcgtcgttcccgtcgctcgccgcgccatctgcgcgtcagtggccagcgtcgc
cgccgctatcgcgatgagcgctacccggcggcttccccgatgccgttgaccgtagcctgc
gcatcgccggaaatggcgtcaggcaaagtctggatccgctatccggttgcgcagagtgcc
gccgttgaacagcaggagcaccaggaacagccagttgaacaaacccaggaaactgccgtt
actcaacaggcggtgatggaagacgcaatcctgactgcgccagtggcaacggaaatcgct
gcaaccgcgccagtggaaacgtcgcatccggaagtgattgccgctccggttgacgcgcaa
cctgaaatcattgcctctgaagatgaagcagtggctgaacaggtagcacaggacgccaaa
gcagtggactcctcccctgaagaacagagcgctgctccggtcgctcaggaagaggcagta
acggttgagccggttgttgacgcgaacatcgctgacgcgccgcaggaacaacctgcgccg
caagcccacgttgaagcgccagaagtgtctgaagaagccgaaaccgtacagccgcagccg
gtaatcgaacctgccgccgctgaaactgcgccggaaactgacgttaaggccgctccggtt
gtggcaaacgtggcaaaagcgcatgttcatccacatgcctccgcacctatgactcgtgcc
ccggcaccggaatacgtgccggaaccgccgcgtcacagtgactgggtgcgtgagcccttt
gcatttagcggcaaaggttccgcaggtggacacagcgccagccatacggcgactgcaccc
gcgacccgtccgggtcagcctgagtaa
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