Atlantibacter hermannii: NCTC12129_03404
Help
Entry
NCTC12129_03404 CDS
T05790
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ahn
Atlantibacter hermannii
Pathway
ahn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12129_03404 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahn03019
]
NCTC12129_03404 (rhlE)
Enzymes [BR:
ahn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12129_03404 (rhlE)
Messenger RNA biogenesis [BR:
ahn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12129_03404 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
UvrD-helicase
P-loop_SecA
Cullin_binding
Motif
Other DBs
NCBI-ProteinID:
VDZ74265
LinkDB
All DBs
Position
1:complement(3073124..3074590)
Genome browser
AA seq
488 aa
AA seq
DB search
MSFDSLGLNPDILRAVTEQGYNEPTPIQHQAIPVVLQGRDLMASAQTGTGKTAGFTLPLL
QLLTDKPYQAKGNRPVRALILTPTRELAAQVGENVREYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLIATPGRLLDLEHQNAVKLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPPR
RQNLLFSATFSDDIKSLAEKLLHNPAEVEVARRNTASEQITQYVHFVDKKRKRELLSLMI
GKENWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDLRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGQALSLVCVDEHKLLRDI
ERLLKREVPRMAIPGFEPDPTIPAEPIQNGRDSSGGGRGRGQSPRGGQSAGRGQPQGQRR
SEGGAPKGERRSGDAAKSERRTGDAARGERRTGDAGKSEKLPRRLGDAAKPAGDRPRRPR
PRKPASAQ
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattcgcttggtttgaaccctgacattttacgcgccgtgaccgaacagggt
tacaacgaacctaccccgattcaacaccaggctatccctgtagtgctacagggtcgcgat
ctgatggccagtgcccagaccggcaccggcaaaaccgcgggctttacgctgcccctgctg
caattgctgaccgataagccgtatcaggcgaagggtaaccgtccggttcgtgcgctgatc
ctgaccccgacccgcgaactggcagcccaggtgggtgagaacgtccgtgaatacagtaaa
tacctcaacattcgttcgctggtagtgtttggcggcgtgagcattaacccgcaaatgatg
aaactgcgtggcggtgtggatgtgctgatcgccacccctggccgtctgctggatctggaa
caccaaaatgcggtgaagctcgataaagtagagatcctggtgctggacgaagcggaccgc
atgctcgacatgggctttatccacgatattcgtcgtgtactggcgaaattgccgccgcgt
cgtcagaatctgttgttctctgccactttctccgacgacatcaaatcgctggcggaaaaa
ctgctacacaacccggcggaagtggaagtggcgcgtcgcaataccgcctccgagcaaatc
acccagtacgttcactttgtggataaaaagcgcaagcgcgagctgctgtcgctgatgatt
ggcaaagagaactggcagcaggtgctggtcttcacccgtactaagcacggcgcgaaccat
ctggctgaacagctgaacaaagacggcattcgcagcgcggctatccacggtaataaaagc
cagggcgcgcgtacccgcgcgttagctgattttaaatccggcgatttacgcgtactggtg
gcgaccgatatcgccgcccgcggtctggatatcgaagaattgccgcatgtggtcaactac
gagctgcctaatgtgccggaagattatgtgcaccgtattgggcgtaccggccgtgccgcc
gcgaccgggcaggcgctgtcgttagtgtgcgttgatgaacataaactgttgcgtgatatt
gagcgtttgctgaagcgcgaagtaccgcgtatggccatcccgggctttgagccggatccg
accatcccggccgagccgatccagaacggccgtgacagcagtggcggcggacgtggccgt
ggtcagtcgccgcgtggcggccagtctgcaggtcgcgggcaaccgcagggccagcgccgt
agcgaaggcggcgcgccgaaaggtgaacgtcgtagcggcgacgctgcgaaaagcgagcgt
cgcactggcgatgctgcgcgaggcgaacgccgtaccggcgatgccgggaaaagtgaaaaa
ctgccccgtcgcctgggtgatgctgcgaagccagccggcgaccgtccgcgtcgtccgcgt
ccgagaaaaccggccagcgcacagtaa
DBGET
integrated database retrieval system
