Atlantibacter hermannii: NCTC12129_03428
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Entry
NCTC12129_03428 CDS
T05790
Symbol
uvrB_1
Name
(GenBank) UvrABC system protein B (excinuclease ABC subunit B)
KO
K03702
excinuclease ABC subunit B
Organism
ahn
Atlantibacter hermannii
Pathway
ahn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC12129_03428 (uvrB_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahn03400
]
NCTC12129_03428 (uvrB_1)
DNA repair and recombination proteins [BR:
ahn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC12129_03428 (uvrB_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCTC12129_03428 (uvrB_1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
UVR
UB2H
SBDS_domain_II
DUF8810
Motif
Other DBs
NCBI-ProteinID:
VDZ74287
LinkDB
All DBs
Position
1:complement(3095612..3097483)
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AA seq
623 aa
AA seq
DB search
MIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEK
DASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTNGMIIDQRA
ILRRLAELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDMALRVELFDEEVERLSLFDPLT
GQVEGVIPRFTVYPKTHYVTPRERIVQAMEDIKVELADRRKVLLANNKLLEEQRLTQRTQ
FDLEMMNELGYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLIIDESHVTIPQIGGMY
RGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGSEIIDQ
VVRPTGLLDPIIEVRPVATQVDDLLSEIRKRVEINERVLVTTLTKRMAEDLTEYLEEHGE
KVRYLHSDIDTVERMEIIRDLRLGEFNVLVGINLLREGLDMPEVSLVAILDADKEGFLRS
ERSLIQTIGRAARNVNGKAILYGDKITPSMAKAISETERRREKQQKYNEEHGIVPQGLNK
KVVDILSLGSGIAKTRNNKGRGKTRTAADVEAAELALTPKALQQKIHQLEAQMLQHAQNL
EFEEAAAIRDQLHQLRELFIAAS
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
gtgattgcggatttgcagcgcccgacgatggtgctggccccgaacaaaacgctggcagcg
cagctgtacggtgagatgaaagagttctttccggaaaacgcggtggagtatttcgtttcg
tattacgactattaccagcctgaagcctacgtgccgagttcggatacgtttatcgagaaa
gacgcctcggtgaacgaacacatcgagcagatgcgtttgtctgccactaaagcgctgctg
gagcggcgggacgtggtcgtggtggcctcagtatcggcgatttatggtctgggcgatccg
gatctgtatctcaagatgatgctgcatctgacgaacggcatgattatcgatcagcgcgcg
atcctgcgtcgtctggcggagttgcaatatacccgcaacgatcaggcgttccagcgcggt
acgttcagggtgcgcggggaagtgatcgatattttccctgcggagtcggacgatatggcg
ctgcgcgtcgaactgtttgatgaagaggtggaacgtctgtcgcttttcgatccgcttacc
ggtcaggttgaaggggttatcccacgttttaccgtttatccaaaaacgcactatgtcacg
ccacgcgagcgcatcgtgcaggccatggaagacatcaaagtcgaactggctgaccgccgc
aaagtgctgctggccaataataaattgcttgaagagcagcgactcacccagcgaacccag
tttgatttagagatgatgaatgaactgggctactgttctggcatcgaaaactactcgcgc
tatctgtccgggcgcgggccgggtgaagcgccgccgacgctgtttgattatttaccggct
gacggcctgctgattattgacgaatcccacgtgaccattccgcaaatcggtgggatgtac
cgtggtgaccgggcgcgtaaagaaacgctggtggaatacggcttccgcttaccgtcggcg
ctggataaccgcccaatgaaattcgaagagttcgaagcgctggcgccgcagacaatttat
gtctcggcgacgccgggtaactatgagctggaaaaatcgggcagcgaaattatcgatcag
gtggtgcgtccgaccggtctgctcgaccccatcatcgaggtgcgtccggttgcgactcag
gtggatgacctgctgtcggaaattcgcaagcgcgtggagatcaatgagcgtgtgctggtg
actaccctgaccaagcgtatggcggaagacctgacggaatatctggaagagcacggcgag
aaagtgcgttatttgcactctgatatcgataccgtggagcgaatggagatcatccgcgac
ctgcgcctgggcgagtttaatgtgctggtgggcattaacttacttcgtgaaggcctggac
atgccggaagtctcgttggtggcgattctggatgccgataaagagggcttcctgcgctct
gaacgctcactgattcagaccattggccgcgcagcccgtaacgttaacggcaaagctatt
ctgtatggcgataagatcacgccttccatggcgaaagccatcagcgaaaccgaacgtcgc
cgcgagaaacagcagaaatacaacgaagagcacggcatcgtgccgcagggtctgaataag
aaagtggtggatattctgtcgctgggcagcggtatcgctaaaacgcgcaataacaaaggg
cggggtaaaacacgcaccgccgccgatgtggaagctgcggaactggcgcttacgccaaaa
gcgttgcagcagaaaattcatcagcttgaagcgcaaatgctgcaacacgcgcaaaacctg
gagtttgaagaagccgccgccattcgcgatcagcttcatcaactgcgcgagttgtttatc
gcggcctcctga
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