Atlantibacter hermannii: NCTC12129_03814
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Entry
NCTC12129_03814 CDS
T05790
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
ahn
Atlantibacter hermannii
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ahn03009
]
NCTC12129_03814 (srmB)
Enzymes [BR:
ahn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12129_03814 (srmB)
Ribosome biogenesis [BR:
ahn03009
]
Prokaryotic type
rRNA helicases
NCTC12129_03814 (srmB)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
UvrD-helicase
AAA_11
CMS1
DUF561
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VDZ74653
LinkDB
All DBs
Position
1:3439675..3440754
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AA seq
359 aa
AA seq
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MTVTTFSELELDESLLKALQDKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLL
PVLQHLLDFPRKKSGPPRILILTPTRELAMQVAEQARELAAHTHLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIERIAGETRW
RNQTMLFSATLEGDAIKDFAERLLNEPEEVSASPSTRERKKIHQWYYRADDIQHKTALLV
HLLKQPDATRTIVFVRKRERVHELAGWLREAGINNCYIEGEMVQAKRNEAISRLTDGRVN
VLVATDVAARGIDIPTLATLLTLICRVPLIPICTASGVLAVRAGKAPRFHWLKRTTICC
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccactttttccgaacttgaacttgatgaaagcctgctgaaagcccttcag
gataaaggcttcactcgcccgacagccattcaggctgccgccattccgcctgccctggaa
gggcgtgatgtgctcggttctgcgccgacaggcaccggtaaaacggcggcatatctgctg
ccggtgttgcagcatttgctcgacttccctcgtaaaaaatccgggccgccgcgcatcctg
attttaacgccgacccgtgaactcgctatgcaggtcgcggagcaggcgcgggagctggcg
gcgcatacccatctggatatcgccacgattaccggcggcgtggcctacatgaaccacgct
gaagtgttcagcgagaaccaggatatcgtggtcgcaaccacgggccgtctgctgcaatac
atcaaagaagaaaactttgactgtcgggcggtcgaaacgctgatccttgatgaagcggac
cgcatgctggatatgggcttcgcgcaggatatcgagcgtatcgccggagaaacccgctgg
cgtaaccagacaatgctgttttccgccacgctggaaggggatgccattaaagacttcgcc
gagcgtctgcttaacgagccggaagaagtctctgcctccccgtctacccgcgaacgtaaa
aagatccaccagtggtactatcgcgccgacgatatccagcacaaaaccgccctgctggtg
catttactcaagcagccggatgccacccgcaccatcgtgtttgtacgcaagcgcgagcgc
gtgcatgagctggcgggctggttacgcgaggcaggcattaataactgctatatcgaaggc
gagatggtgcaggctaagcgcaacgaggctatcagccgtctgactgacggccgggttaat
gtcctggtggcaaccgacgtggcggcgcgtggtattgatatcccgacgttagccacgtta
ttaactttgatatgccgcgtaccgctgatacctatctgcaccgcatcgggcgtactggcc
gtgcgggccggaaaggcaccgcgatttcactggttgaagcgcacgaccatttgctgttag
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