Atlantibacter hermannii: NCTC12129_03946
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Entry
NCTC12129_03946 CDS
T05790
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
ahn
Atlantibacter hermannii
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ahn03016
]
NCTC12129_03946 (truD)
Enzymes [BR:
ahn01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
NCTC12129_03946 (truD)
Transfer RNA biogenesis [BR:
ahn03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
NCTC12129_03946 (truD)
Prokaryotic type
NCTC12129_03946 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
VDZ74768
LinkDB
All DBs
Position
1:complement(3559693..3560739)
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AA seq
348 aa
AA seq
DB search
MDFEQLTWLHGKPQGSGVLKASPEDFVVVEDLGFAPDGEGEQLLVRIVKKGCNTRFVADA
LAKFLKVPAREVSFAGQKDKFAVTEQWICVRLPGKEMPDLSGFTLEGCQVLEYARHKRKL
RTGALKGNRFTLMLRDISHRDELEQRLGAVKTDGVPNYFGPQRFGRGGSNLIQARVWAQN
NTPLRDRNKRSFALSAARSALFNLLVSERLKKPDFNQVVDGDALQLAGRGSWFVATQDEL
PTLQSRVDHHELLITAALPGCGDWGTVRQALENEQRVIAGEADLQALLTREKVEAARRAM
LMYPQEMSWNWQDEATVEVRFWLPAGSFATSVVRELITTSGDYADIAE
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgagcaactcacctggctgcacggtaaaccgcagggctccggcgtgcttaag
gcgtcgccggaagattttgtggtggtggaagatttagggttcgcgccggacggcgaaggc
gaacaactgctggtgcgtatcgttaaaaagggctgcaatacccggtttgtagcggacgcg
ctggcaaaatttttgaaagtgcccgcccgtgaagtcagttttgccggacaaaaggacaaa
tttgcggtaaccgaacagtggatttgcgtgcgcttacccggcaaagagatgccggattta
agcggttttacactcgagggctgtcaggtactggaatatgcgcgtcacaagcgcaagctg
cgcaccggcgcgttaaagggcaaccgctttacgctgatgttgcgagacatttcgcatcgt
gacgagctggaacagcgcttaggtgccgtgaaaaccgacggcgtaccgaactatttcgga
ccgcaacgttttggccgcggcggcagcaacctcatccaggcgcgtgtgtgggcgcaaaat
aacacgcctcttcgcgatcgcaataaacgcagttttgcattgtcagcggcccgcagtgcg
ttgtttaatctactggtcagcgagcgcctgaaaaaaccggactttaatcaagttgttgac
ggcgatgcgctacaattagcggggcgcggaagttggtttgtggcaacacaggacgaactg
ccgacgcttcagtctcgtgtcgatcatcatgaactgctcatcaccgccgcgctgcccggt
tgcggcgactggggaacggtgcgccaggcgctggagaatgaacaacgcgtgatcgctggt
gaggcggatttacaggctttattaacccgtgagaaagttgaggccgcgcgtcgcgcaatg
ctgatgtaccctcaagagatgagctggaactggcaggacgaggccacggtcgaagtgcgt
ttctggttgcctgcaggtagtttcgccaccagtgtggtaagggaattaataacaacgtcg
ggtgattatgcggatattgctgagtaa
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