Atlantibacter hermannii: NCTC12129_03973
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Entry
NCTC12129_03973 CDS
T05790
Symbol
rumA
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ahn
Atlantibacter hermannii
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ahn03009
]
NCTC12129_03973 (rumA)
Enzymes [BR:
ahn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NCTC12129_03973 (rumA)
Ribosome biogenesis [BR:
ahn03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NCTC12129_03973 (rumA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
Methyltransf_25
TRM5-TYW2_MTfase
RrnaAD
MTS
Methyltransf_11
Cons_hypoth95
Methyltransf_15
UPF0020
Methyltransf_4
Methyltransf_23
Methyltr_RsmB-F
PrmA
FtsJ
Ubie_methyltran
TPMT
Ribosomal_L22
CMAS
Motif
Other DBs
NCBI-ProteinID:
VDZ74795
LinkDB
All DBs
Position
1:complement(3585512..3586813)
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AA seq
433 aa
AA seq
DB search
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHDGKALFISGLLPGECAEVTLTQDKRN
FGHATVKKRLTDSPARVTPRCPHFGVCGGCQQQHASVALQQSSKAQSLARLMNHPVDNII
ASPEWGYRRRARLSLNYLSRAQTLEMGFRKAASSDLVDIRQCPVMVPRLEALLPELRICL
NGLQGVRRLGHVELVLADNGPLMVLRHTEPLSANDKQKLEQFSHQHDVALFLAPQSDALE
HITGDEPYYHSDGLRLTFSPRDFIQVNDAVNQQMVARALEWLDVQPTDRVLDLFCGMGNF
TLPLARRAQSVVGVEGVPALVAKAQRNAESNGLKNVIFFHENLEEDVTRQPWAAQGFDKI
LLDPARAGAPGVMQHVVKLMPRRVVYVSCNPATLARDSEELLRAGYHIQQLAMLDMFPHT
GHLESMVLFVRHE
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctgcaaagcgacgcgtgacgacgcgtcagatcataaccgtaacg
gtaaacgaccttgacccctttggccagggcgtggcgcggcacgatgggaaagcattgttt
atcagcggcctactgcccggcgagtgtgcagaagtcacgcttactcaggacaaacgcaat
tttggacatgccacggtaaaaaaacggctcaccgacagcccggcccgtgtcacgccgcgc
tgcccgcattttggcgtatgcggcggctgccagcagcaacatgccagcgttgcgctccag
caaagcagtaaagcgcagtccctggcgcggctgatgaaccatcccgttgacaatattatc
gccagcccggagtggggctatcgccgccgtgcgcggttaagcttgaattatttgtcacgt
gcgcaaaccttagagatgggatttcgtaaagcggcatccagcgacctggtggatatccgg
caatgcccggttatggtgccccggcttgaggcgttgctgccggagcttcggatctgcctg
aatggcttacagggtgttcggcgactgggacatgtggaactggtgctggcggataacggc
ccgctgatggtgttgcgtcatacggagccgttatcggcgaacgataaacagaaactggaa
cagttctcgcatcagcatgacgttgcgctctttttagcgccgcagagtgatgcgctggaa
cacatcaccggcgatgagccttactatcattctgacggtctacgcttaacctttagtccg
cgcgactttattcaggtgaatgatgcggtgaatcagcagatggtggcgcgggcgctggaa
tggctggatgtgcaaccgactgaccgggtactggatctgttttgcggaatgggcaatttt
acgctgccgcttgcccgccgcgcccaaagcgtggtgggtgtggaaggcgtaccggcgctg
gttgccaaggcccaacggaacgcagagagtaatggcctgaaaaatgtcatcttttttcat
gaaaatttggaagaagatgttacccgtcagccctgggcagcgcagggatttgataagata
ttgctggacccggccagggcgggcgcgccgggcgtgatgcagcatgttgtgaaattaatg
ccgcgtcgcgtggtctatgtttcctgtaatccggcaacgcttgcgcgggatagcgaagaa
ttactgcgggcgggataccacattcagcagttggcgatgttggatatgttcccccacact
gggcatctggagtctatggtgctgtttgtacggcatgagtga
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