Atlantibacter hermannii: NCTC12129_04009
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Entry
NCTC12129_04009 CDS
T05790
Symbol
recB
Name
(GenBank) exonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ahn
Atlantibacter hermannii
Pathway
ahn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NCTC12129_04009 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahn03400
]
NCTC12129_04009 (recB)
Enzymes [BR:
ahn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NCTC12129_04009 (recB)
DNA repair and recombination proteins [BR:
ahn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC12129_04009 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
Cas_Cas2CT1978
AAA_11
Motif
Other DBs
NCBI-ProteinID:
VDZ74826
LinkDB
All DBs
Position
1:complement(3616891..3620433)
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AA seq
1180 aa
AA seq
DB search
MTDETVQPLDPLRLPLVGERLIEASAGTGKTYTIAALYLRLLLGLGGPAAHPRVLMPESL
LVVTFTEAATEELRGRIRTNIHELRIACLRGHTSSPLFQQLLAEIPDLADAAQALLLAER
QMDEASIFTIHGFCQRMLNLNAFESGMPFEQKLIEDESLLRYQACADFWRRHCYPLDKSV
ARAISELWQGPQALLRDINSYLQGEAPQLKSTPADDETIESRHQKIIERIEQVKIRWRAA
AAEVGPLIAGSDVDKRSYSSRNLPSWLDKVNAWACEETQTYALPDALEKFAQSTLNEKTK
KGEPPRHPLFTEIDALLAEPLSLRDLVLARAIKEIRYTVAMQKRRRGELGFDDMLSRLDE
ALNQPAGEALAQAIRTRFPAAMIDEFQDTDPQQYRIFRRIWHKQPDTALLLIGDPKQAIY
AFRGADIFTYMRARGEVSAHYTLDTNWRSAPGMVASVNRLFSQLPQPFMFKEIPFLKVNA
APKNHGLRFEVNGQTQSAMKLWLMDGEGAGVSEYQQTMAAVCAGQIRDWLDAGSRGEALL
WDNEKKRPVQASDITVLVRNRIEAAVIRQALEALTIPSVYLSNRDSVFSTQEALDLLWVL
QATLNPELESALRSAIATSMLGLNAATIDAINQDEDAWDALVEEFDGYRQIWLTRGVMPM
IRALMVERRIAENLLATPGGERRLTDLLHLTELLQEASAQLDSEPALLRWLSQHIAEPDA
NAASQQLRLESDKHLVQIVTVHKSKGLEYPLVWLPFIADYREQKQAFYHDRATFMPVLDL
DNDEESLALAEAERLAEDLRLLYVALTRSVWHCSIGIAPLFKGRGAKKGDTSLHQSALGR
LIQGGEPQDPAGLRRCLEALCGEDISLEIAVDPDTQPWQPPQPPALQLDAREPSREVKDS
WRVTSYSALQQHGGSAAQLLLPRLDIDAAGNRVDSVSPEMTPHTFPRGASPGTFLHGLFE
NLDFTAQLDAAWLAEQLQLGGFDSDWAGVFTAWFDAILAAPLNASGVRLNQLGAKDKQVE
LEFYLPIETDLESQRLDALIRRYDPLSASCPPLDFKQVRGMLKGFIDLVFRWQGRYYLLD
YKSNWLGDGSEAYTREAMAQAMQSHRYDLQYQLYTLALHRYLRHRLAGYDYEKHFGGVIY
LFLRGVDPAHPENGIFTTRPDAGLIQGMDALFAGQELATQ
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgagaccgtccagccccttgatcccttacgtttgcccctggtgggcgaacgg
ctgatcgaagcgtcggccggtaccggtaaaacgtatacgatagccgcgctgtatttgcgg
ctgttattaggactgggcggtcccgccgcgcatccgcgcgtgttaatgccggaatcgctg
ctggtggtgacgtttaccgaagcggccactgaagaactccgtggccgtatccgcaccaat
attcacgaactgcgtattgcctgcctgcgcgggcatacctccagcccactttttcagcaa
ttgctggctgaaatccccgatctggccgatgccgcgcaggcattgctgctcgccgagcgc
cagatggatgaagcctcgatttttactatccacggcttttgccagcgcatgctcaatctc
aacgcctttgaatccggcatgccgtttgagcaaaagctgatcgaagatgagtctttactg
cgttatcaggcgtgtgcggatttctggcgtcggcattgctatccgcttgataaatcggtg
gcacgcgccatcagcgaattatggcaagggccgcaggcgctactgcgcgatatcaacagc
tatctgcagggcgaggcgccacagctgaagtcgacacccgctgatgatgaaaccattgaa
agccgccatcaaaaaattattgagcggattgaacaggtaaaaatacgctggcgcgctgcg
gcagcggaggtgggcccgctgattgccgggtccgacgttgataaacgcagttacagcagc
cgcaacctgccgtcatggctggataaggtcaacgcatgggcctgtgaagagacccaaacc
tatgcgttgccggatgcgctggaaaagtttgcccagtcgacgcttaatgaaaaaaccaaa
aaaggcgagccgccgcgtcatccgctgtttactgaaatcgatgctttgctggcggagccg
ctttcactgcgcgacctggtgttggcgcgtgcgattaaagaaatccgctacaccgtggcg
atgcaaaaacgccgccgtggcgagctgggttttgacgacatgctgagcagactggatgag
gcgctcaaccagcctgccggcgaggccctggcgcaggcgatacgcacccgtttcccggcg
gccatgattgatgagtttcaggatactgacccgcagcaataccgtatcttccgccgtatc
tggcataaacagcctgataccgcattgctgttgatcggcgatccgaaacaggcgatatac
gcttttcgcggtgcagacatttttacgtatatgcgcgcgcgaggtgaagttagcgctcac
tatactcttgatactaactggcgttccgcgccgggtatggtggcaagcgtcaatcgcctg
tttagtcagctaccccagccgtttatgttcaaagagatcccctttttgaaggtcaatgcc
gcgcctaagaatcacggtttgcgttttgaggttaacggccagacgcaatcagcgatgaaa
ctctggctgatggatggcgaaggcgcgggagtgagcgagtaccaacaaactatggcagca
gtctgtgccggacaaatccgcgactggctggatgccggtagccgtggcgaagcgttgctg
tgggataatgaaaaaaaacgtcccgttcaggcatcggatattaccgtgctggtgcgtaac
cgcatcgaagccgcagtgatccgtcaggcgctggaggcgttaaccatcccttcggtttac
ctttcaaaccgcgacagcgttttctctacgcaggaagcgctggatctgctttgggtcttg
caggcgacgctcaatcctgagctggaaagcgccttacgcagcgccatcgccaccagcatg
cttgggctcaatgccgcgacgatagacgcgattaatcaggatgaagacgcctgggacgcg
ctggttgaggagttcgacggctaccgacaaatctggttaacccgtggcgtgatgcccatg
atccgcgccttaatggtggagcgacgtatcgccgaaaatttactggcgacccccggcggc
gaacggcgcttaacagacctgctgcatctgactgaattattgcaggaggcgtctgcgcag
ctcgacagcgaaccggcgctgctgcgctggctctctcaacatattgctgaaccggatgca
aacgcagccagtcagcagcttcgtctggaaagtgataagcatctggtgcagatcgtcacc
gtgcacaaatcgaaagggctggaatatccgctggtctggctgccgttcatcgccgattac
cgggagcaaaaacaggcgttttatcacgatcgtgccacctttatgccggtgctcgattta
gacaatgatgaagaaagcctggcgctcgcggaagctgagcggctggcggaagatttgcgc
ttgctgtatgtggcactaacccgttcggtctggcactgcagcatcggcattgcgccctta
tttaaaggacgcggggccaaaaaaggcgataccagtcttcaccagagtgcgctgggccgc
ctgattcagggcggcgaaccgcaggatccagccgggttgcgccgctgccttgaggcgctg
tgcggtgaggatattagcctggaaattgccgtcgatccggatacacagccctggcagccg
ccgcaaccgcccgcgttgcaactggatgcccgcgaaccgagccgcgaggtcaaagacagc
tggcgcgtcaccagttattccgcgctccagcagcatggcggtagcgcagcgcaactgctg
ttaccccggctggatattgacgctgccggtaatcgggtcgacagcgttagcccggagatg
acgcctcacaccttcccacgcggcgcatcgccgggaacctttctgcacggcctgtttgag
aacctcgattttactgcgcaactggatgcagcctggcttgccgaacaactgcaattgggc
ggattcgacagcgactgggcaggggtatttaccgcctggtttgacgcgattttagcggca
ccgctcaacgcgtccggcgtccggcttaatcagctcggcgcgaaggataaacaggtcgag
ctggaattttacctgccgattgaaaccgatctggaatcacaacggctggacgcgttaatt
cgccgttacgatccgctttctgcctcgtgcccgcccctcgatttcaaacaggtacgcggt
atgctgaaaggctttatcgatctcgttttccgctggcaggggcgttattacctgctggac
tataaatcgaactggctgggcgacggcagcgaagcctatacgcgtgaagcgatggcgcag
gcaatgcagtcccaccgttacgatttgcaatatcagctgtataccctggcgctgcaccgc
tatttacgccatcgtctggcgggttatgactatgaaaaacattttggcggcgtcatttat
ctgttcctgcgcggcgtggacccggcccatccggaaaatggcatctttaccacccggccg
gacgccgggttgatacagggaatggacgcgttatttgccggtcaggagttggcgacccaa
tga
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