Atlantibacter hermannii: NCTC12129_04334
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Entry
NCTC12129_04334 CDS
T05790
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase (DEAD-box protein)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ahn
Atlantibacter hermannii
Pathway
ahn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12129_04334 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahn03019
]
NCTC12129_04334 (deaD)
03009 Ribosome biogenesis [BR:
ahn03009
]
NCTC12129_04334 (deaD)
Enzymes [BR:
ahn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12129_04334 (deaD)
Messenger RNA biogenesis [BR:
ahn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12129_04334 (deaD)
Ribosome biogenesis [BR:
ahn03009
]
Prokaryotic type
rRNA helicases
NCTC12129_04334 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
VDZ75142
LinkDB
All DBs
Position
1:complement(3918388..3920328)
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AA seq
646 aa
AA seq
DB search
MTEFETTFSDLGLKTPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPTAEGEELD
IETLAAALLKMAQGERPLILPPDAPMRPRREFRERDERFERRGDRNDRGPRTDRPQRDGE
ERPRRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPDRGGERRGGGAGRGGFGGGERREGGR
TEGRRFSGERREGGAGRSFSGERREGGRGPRREDGAAPTRRRFGDA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgactgaattcgaaaccactttttctgatctggggctgaaaactcctatccttgaagcc
cttaacgatctgggttacgaaaagccatctccgatccaggctgagtgcattccgcacctg
cttggtggccgcgatgttctgggtatggcccagacaggcagcggcaaaaccgcagcgttc
tcgttaccgctgctgaacaaccttgatcctgaactgaaagcaccgcaaatcctggtgctg
gctccgacccgcgaactggcggttcaggtagctgaagcaatgacggacttctctaaacat
atgcatggcgtaaacgtagttgccctttacggcggccagcgttatgacgtgcagttacgc
gccctgcgtcagggcccgcagattgttgtgggtaccccaggccgcctgcttgaccattta
aaacgtggcacgctgaacctgtccaacctgagcggtctggtactggatgaagcggatgaa
atgctacgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggaaggt
catcagaccgcgctgttctcagcaaccatgccggaagccattcgccgtattacccgccgc
tttatgaaagagccgcaggaagtacgtattcagtccagcgtcaccacccgtccggacatc
agccagagctactggacggtgtacggcatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagattttgacgcggcgatcatcttcgttcgcaccaaaaacgcgaccctggaa
gtggctgaagcgctggagcgcagcggttacaacagcgccgcgctgaatggcgacatgaac
caggcgctgcgcgagcagacgctggaacgtctgaaagacggtcgtctggatatcctgatt
gcaaccgacgtggcagcacgtggcctggacgttgaacgtatcagcctggtggtgaactac
gatattccgatggattctgaatcctacgttcaccgtatcggccgtaccggtcgtgcgggc
cgcgctggccgcgccctgctgttcgttgagaaccgcgaacgccgcctgctgcgtaacatt
gaacgcaccatgaagctgactattccggaagtggaactgccgaatgcagaactgctgggc
aaacgccgtctggaaaaatttgctgcgaaagtgcagcagcagctggaaagcagcgatttg
gatcagtaccgtgcattgctggcgaaaatccagccgaccgctgaaggtgaagagctggac
atcgaaacgctggctgccgcgctgctgaaaatggcgcagggcgaacgtccgctgatcctg
ccgccggatgcgccgatgcgtccgcgtcgtgagttccgtgagcgtgacgaacgtttcgaa
cgtcgcggcgatcgtaacgatcgtggcccgcgtaccgatcgtcctcagcgtgatggcgaa
gagcgtccacgtcgtgaacgtcgtgacgttggcgatatggaactgtatcgcattgaagtg
ggtcgtgatgatggcgttgaagtacgtcatatcgttggcgcgattgctaacgaaggtgac
atcagcagccgttacattggcaacatcaagctgtttgcttcccactcgactatcgagctg
ccgaaaggcatgccgggcgaagttctgcaacacttcacccgcacgcgtattctcaataag
ccgatgaatatgcagctgctgggcgatgcgcaaccgcgcccggatcgcggcggtgaacgt
cgtggcggtggtgctggccgtggcggtttcggtggtggcgagcgtcgtgaaggcggtcgt
accgaaggtcgtcgtttcagcggtgaacgtcgtgaaggcggcgcaggccgtagcttcagt
ggcgaacgtcgtgaagggggccgtggcccgcgtcgtgaagatggcgcagcgccgacccgt
cgtcgtttcggtgatgcataa
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