Atlantibacter hermannii: NCTC12129_04771
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Entry
NCTC12129_04771 CDS
T05790
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ahn
Atlantibacter hermannii
Pathway
ahn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12129_04771 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahn03021
]
NCTC12129_04771 (rho)
03019 Messenger RNA biogenesis [BR:
ahn03019
]
NCTC12129_04771 (rho)
Transcription machinery [BR:
ahn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NCTC12129_04771 (rho)
Messenger RNA biogenesis [BR:
ahn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NCTC12129_04771 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
VDZ75542
LinkDB
All DBs
Position
1:complement(4321814..4323073)
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AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgatcactctcggcgaaaat
atggggctggaaaacctggcccgtatgcgtaaacaggacattattttcgccatcctgaag
caacacgcgaagagtggcgaagatatctttggcgatggtgtgctggagatattgcaggac
ggatttggtttcctccgttccgcagacagttcctacctcgccggtcccgatgacatctac
gtttctcccagccaaatccgccgtttcaaccttcgtacaggggatactatctccggtaag
attcgtccgccgaaagaaggcgagcgttattttgcgctgctgaaagttaacgaagtcaac
tacgacaaacccgagaacgcccgtaacaaaattctgttcgaaaaccttaccccgctgcat
gcaaactcccgtttgcgtatggaacgtggcaacggttcgaccgaagacttaaccgcgcgt
gtactggatttggcttcgccgattggccgtggccagcgtggtctgattgttgcaccgccg
aaagcgggtaaaaccatgctgctgcagaacatcgcgcaaagtatcgcgtacaaccatcct
gactgcgtactgatggttctgcttatcgacgaacgtccggaagaagtgaccgagatgcag
cgtctggtgaaaggcgaagtggttgcgtcaacgtttgacgaacctgcctcccgccacgtt
caggttgctgaaatggttatcgagaaagcgaagcgtctggttgagcataaaaaagacgtt
attatcctgctcgactccattacccgtctggcgcgcgcatacaacaccgtggtgccggct
tcaggtaaagtcctgaccggtggtgtggacgctaacgccctgcaccgtccgaagcgtttc
ttcggtgctgcgcgtaacgtggaagagggcggcagcctgaccattatcgccaccgcgctg
attgataccggctccaaaatggacgaagttatctacgaagaatttaaaggtacaggcaac
atggaactgcacctgtctcgtaagattgcagaaaaacgcgtcttcccggctatcgactac
aaccgttccggtacccgtaaagaagagctgttaacgactcaggaagagctgcaaaaaatg
tggatcctgcgcaagattattcacccaatgggcgaaatcgacgcgatggaatttctcatt
aataagcttgccatgacgaagacgaatgatgatttcttcgacatgatgaaacgctcttaa
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