Atlantibacter hermannii: NCTC12129_04877
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Entry
NCTC12129_04877 CDS
T05790
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase RfaD
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
ahn
Atlantibacter hermannii
Pathway
ahn00541
Biosynthesis of various nucleotide sugars
ahn01100
Metabolic pathways
ahn01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
NCTC12129_04877 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
ahn01005
]
NCTC12129_04877 (rfaD)
Enzymes [BR:
ahn01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
NCTC12129_04877 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
ahn01005
]
Core region
NCTC12129_04877 (rfaD)
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Ortholog
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Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
KR
adh_short
Ldh_1_N
Motif
Other DBs
NCBI-ProteinID:
VDZ75639
LinkDB
All DBs
Position
1:4418437..4419369
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AA seq
310 aa
AA seq
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MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFANLVDLDIADYMDKEDFLIQI
MAGEEFGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATY
GGRTSDFKESREFEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPRENHKGS
MASVAFHLNTQLNNGEKPKLFEGSENFKRDFVYVGDVAAVNLWFMEHGVSGIFNLGTGRA
ESFQAVADATLAWHKQGEIEYIPFPEKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVT
EYMAWLNRDA
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgatcatcgttactggcggcgcgggttttatcggcagcaacatcgttaaggccctgaat
gataaaggcatcaccgatattctggtggtggacaacctgaaggatggcaccaagttcgca
aacctggtggatctggatatcgctgattatatggataaggaagatttcctgatccagata
atggcgggagaagagttcggggatatcgaggcgattttccatgaaggcgcctgctcttcc
accaccgagtgggatggcaagtatatgatggataacaactatcaatactcaaaagagctg
ctgcattactgcctggagcgtgaaattcctttcctgtacgcctcttccgcagccacctac
ggcggtcgcacctcggatttcaaagaatcacgcgaatttgagaagccgctgaacgtctat
ggctactccaagtttttgtttgatgagtatgtgcgtcaaatcctgccagaagcgaactca
caaattgtcgggttccgttatttcaacgtctatggtccgcgtgaaaaccacaaaggcagc
atggcaagcgtcgctttccatctcaatacgcaattgaataacggtgaaaaacccaagctc
tttgaaggcagcgagaatttcaaacgcgatttcgtgtatgtgggcgatgtcgccgcggtg
aacctgtggttcatggagcacggcgtatccggcatttttaacctgggtacgggccgtgca
gagtccttccaggccgttgccgatgcgaccctggcctggcataaacaaggcgagattgaa
tacattccgttcccggaaaaactcaaaggccgctaccaggcattcactcaggccgatctc
actaacctgcgtgccgctggctacgataagccgttcaaaaccgttgccgaaggcgtaaca
gaatatatggcctggctgaaccgcgacgcgtaa
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