Atlantibacter hermannii: NCTC12129_04970
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Entry
NCTC12129_04970 CDS
T05790
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ahn
Atlantibacter hermannii
Pathway
ahn03030
DNA replication
ahn03410
Base excision repair
ahn03420
Nucleotide excision repair
ahn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ahn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12129_04970 (polA)
03410 Base excision repair
NCTC12129_04970 (polA)
03420 Nucleotide excision repair
NCTC12129_04970 (polA)
03440 Homologous recombination
NCTC12129_04970 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahn03032
]
NCTC12129_04970 (polA)
03400 DNA repair and recombination proteins [BR:
ahn03400
]
NCTC12129_04970 (polA)
Enzymes [BR:
ahn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC12129_04970 (polA)
DNA replication proteins [BR:
ahn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC12129_04970 (polA)
DNA repair and recombination proteins [BR:
ahn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NCTC12129_04970 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC12129_04970 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
Prok-E2_E
HHH_5
Motif
Other DBs
NCBI-ProteinID:
VDZ75764
LinkDB
All DBs
Position
1:complement(4497318..4500104)
Genome browser
AA seq
928 aa
AA seq
DB search
MVQIPENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLMQYQPTHAAV
VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT
LAREAEKAGRPVLISTGDKDMAQLVTPDITLINTMTNTILGPEEVVTKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLHGLGGLDTLFAEPEKIAGLSFRGAKTMAAKLAEHK
EVAYLSYQLATIKTDVELELTCDRLEVKQPVVDVLVDLFKKYEFKRWTADVEAGKWLQAK
GAKPAAKVQETIVINEEPDEPATVLSYDNYVTILDEKTLTEWIRRLEKAPFFAFDTETDS
LDNHNARLVGFSFATEPGVAAYVPVAHDYIDAPEQLSCERVLELLKPLLESESARKVGQN
LKYDRGVLQNYGVELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKG
KNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLEKEKGPRHVFETIEMPLVPVLSRV
ERNGVKIDPAVLHRHSEELTLRLAELEQKAHEIAGEPFNLSSTKQLQTILFEKQGIKPLK
KTPGGAPSTSEEVLEELALDYPLPKVILQYRGLAKLKSTYTDKLPLMINPKTGRVHTSYH
QAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRD
KGLLTAFADGLDIHRATAAEVFGLPLESVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIP
RKESQKYMDLYFERYPGVREYMERTRQQAKEQGYVETLDGRRLFLPDIKSSNAARRAGAE
RAAINAPMQGTAADIIKRAMIAVDAWLEKEQPRVKLIMQVHDELVFEVHKDDVAAVSEKI
HELMENSMKLDVPLLVEVGSGENWDQAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggttcaaattccagaaaatcccctaatcctcgttgatggttcttcttacctgtaccgg
gcatatcatgctttccctccgctcactaatagcgcaggcgaaccgacgggggcaatgtac
ggcgtactcaatatgctgcgtagcctgttgatgcagtatcaacctactcatgccgcagtg
gtctttgatgccaagggcaaaacatttcgtgatgagctgtttgagcattacaaatcacat
cgcccgccaatgcccgacgatctgagagcgcaaatcgaaccgctgcatgccatggtaaaa
gcgatggggctgccgttgctggccgtttccggtgttgaagctgacgacgttatcggtacg
ctggcccgcgaagcagaaaaagcaggccgtccggtgctgatcagtaccggcgataaagat
atggcccagctggttacgccggacattacgcttatcaacacgatgacaaataccattctc
ggccctgaagaggtggtgacgaaatacggcgtgccgccggaattgatcatcgacttcctg
gcgctgatgggtgactcctcagataacatcccgggcgtgcctggcgtaggcgagaaaacg
gcgcaggcgttgttacatggcctgggtgggctggatacgctgtttgccgagccggaaaaa
atcgcaggcctgagtttccgtggcgccaaaacgatggcggctaagctcgcggaacataaa
gaggtggcgtatctctcttaccagcttgccaccatcaaaaccgatgtggaacttgaactg
acctgcgatcggctggaagtgaaacagccggtagtggatgtgcttgttgatctgtttaaa
aaatatgagttcaaacgctggactgcggatgttgaagccggtaaatggcttcaggcaaaa
ggcgcgaagcctgcggcaaaagtgcaggaaactatcgttatcaatgaagagcctgacgaa
ccggctactgtgctctcttacgataattacgtcaccattctcgatgagaaaacgcttacc
gagtggattcgccgtctggagaaagcgccgttcttcgcttttgataccgaaacggacagc
ctcgataaccacaatgcacggctggtgggtttctcctttgcgacggaacctggcgtcgca
gcctatgtgcccgtggcgcacgactatattgatgcgccggaacagctaagctgcgagcgg
gtgctggaactgcttaaaccgcttcttgagagcgaaagcgcccgtaaagtagggcagaac
ctcaagtatgatcgcggcgtcttgcagaactatggcgttgagctgcgcggtattgctttc
gataccatgcttgaatcttacattctggacagcgttgctggccgtcatgacatggacagc
ctgtctgatcgctggctgaaacataaaaccattacctttgaagagattgccggtaaaggt
aaaaaccagctgacatttaaccaaatcgcgctggaagaagccgggcgttatgccgcggaa
gacgcggatgtcacgttacaactgcatctgaaaatgtggccgaagcttgagaaagaaaaa
gggccgcgacacgttttcgaaaccatcgaaatgccgttagtacccgtgctgtcgcgtgtt
gagcgtaacggcgtgaaaatcgatccggcggttttgcatcgtcattccgaagaactcacg
ctgcgtctggctgaactggagcaaaaagctcatgagattgcgggcgagccgtttaatctc
tcatccaccaaacagctgcaaacgattttgtttgagaagcagggcattaagccgctgaag
aaaacgccgggcggcgcgccgtccacgtcggaagaagtgctggaagaactggcgctcgac
tacccgctgcccaaagtgatcctgcaataccgtggcctggcgaagcttaaatccacatat
accgataagctgccgctgatgattaacccgaaaaccgggcgggtgcatacctcttatcat
caggccgtaacggcaacgggccgtctttcttccaccgatccgaacctgcaaaatattccg
gttcgtaacgaagaagggcgcaggatccgtcaggcgtttatcgcgccggaagattatgtg
attgtctcagcggactactcgcaaattgaactgcgtattatggcgcatctgtcacgcgat
aaaggtttgcttaccgcgttcgctgacgggctcgacattcaccgcgccacggcggcggag
gtatttggtttgccgctggaaagcgtgtcgggcgagcaacgacgcagcgctaaagcgatt
aacttcggcctgatttatggcatgagcgcgttcggtctgtcacgccagctcaatatcccg
cgtaaagagtcccaaaaatacatggacttgtactttgagcgttatccgggcgtgcgcgag
tatatggaacgaacccgccagcaggcgaaagagcagggctatgtggaaacgctggacgga
cgccgtctgttccttccggacatcaaatccagcaacgccgcacgccgtgccggcgcagaa
cgcgcagccatcaatgcgcctatgcaaggcactgcagcagacatcatcaaacgtgccatg
atcgcggtggatgcctggcttgagaaagaacagccgcgcgtgaaactgatcatgcaggtg
cacgatgaactggtgtttgaagtgcataaagatgacgttgccgccgtctcagaaaagatc
catgagcttatggaaaacagcatgaaactggatgttccgttgctggtggaagtgggaagc
ggtgaaaactgggatcaggcgcactaa
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