Aeromonas hydrophila pc104A: V429_02025
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Entry
V429_02025 CDS
T03193
Name
(GenBank) diguanylate phosphodiesterase
KO
K18765
RNase E specificity factor CsrD
Organism
ahp
Aeromonas hydrophila pc104A
Brite
KEGG Orthology (KO) [BR:
ahp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahp03019
]
V429_02025
Messenger RNA biogenesis [BR:
ahp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
V429_02025
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
AHX67687
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All DBs
Position
419146..421074
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AA seq
642 aa
AA seq
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MKLTTQLVSFITLCVIAAMAMVLLGGVFSFRELGMEMQQKKVNSLVEIIDKQLEVADDHQ
DLTRWLPTLLRSAHVVELEIRQDKQRIYWFRDVQQPTDESLLIPYHQPMPHQPGMQADFK
LERPFKEFEYSIKAMSGISLGVFIVVFGLWYSIRWLRLQLRGAELLAERAQLILDNKLTK
LAHDPADEWPQPASQALDYLLAELADARKERSRFDNFIRSNAFVDKMTGIGNRLFFDNRL
ESAIMEASVMSGGVLLIELAGLEELDPELNGRQSQDLLMEASASIAAFVRKHNGALQARY
AGQVFAVLLPNMSESEMVDGASQLHKSLQRLHWPEGVNPDTAVYLGAVCYQAEDSLLKVQ
EEAELALKSARLQGHTGWFLYEKQLDEEQSSKGTVRWRTLIGRRIEEHGIDFYVQPVQQE
RDQVVLQQDLLIRIHDEQGRELQAGVFMPMAEKAGLLLPLDRLVAEQTLGLLRQRSEQSC
PISLTLCAQSLLHREFQRWLFFDLFQLPRSTNERLILQLSEAQVTRHYEALKRPLRALRM
LGCQLAIDHAGQDVVSTQYIKEFEINFLKLHPSLVREIHTRQVNQMAVRSLVGGCANTRT
RVIAVGVESGDEWKMLRHLGVHAGQGPWFAEPERLVLEPAGA
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgaccactcagcttgtctcgtttattaccctgtgtgtcattgcggccatggcc
atggtgctgcttggcggggtgttcagctttcgtgagctgggcatggagatgcaacagaag
aaggtcaactcgctggtcgagatcatcgacaagcagctggaggtggccgacgatcatcag
gatctcacccgctggctgccgaccctgctgcgctctgcccacgtggtggagctggagatc
cgccaggacaagcagcggatctactggtttcgcgacgtacagcagccgaccgacgagagc
ctgctgatcccctatcaccagcccatgccccatcagccgggcatgcaggccgacttcaag
ctggagcggccgttcaaggagttcgagtactccatcaaggcgatgtccggcatctccctc
ggcgtcttcatcgtggtgttcggcctctggtactccatccgctggctgcggttgcagttg
cggggggccgagctgctggccgagcgcgcccagctgatcctcgacaacaagctcaccaag
ctggcccatgatccggccgacgagtggccgcagccggccagccaggccctcgactatctg
ctggccgagctggcggatgcccgcaaggagcgcagccgcttcgacaacttcatccgcagc
aacgccttcgtcgacaagatgaccggcatcggcaaccggctgttcttcgacaaccggctg
gagagcgccatcatggaggcgagcgtgatgagcggcggcgtgctgctgatcgagctggcc
gggctggaggagctggatcccgagctgaacggccgccagagccaggatctgctgatggag
gcgagcgcctccatcgccgccttcgtgcgcaagcacaacggtgccctgcaggcccgctat
gccggccaggtgtttgccgtgctgctgcccaacatgtcggaaagcgagatggtggatggc
gccagccagctgcacaagagcctgcagcggctgcactggcccgagggggtcaatccagac
accgccgtctatctcggcgcggtctgctatcaggccgaggattctctgctcaaggtgcag
gaggaggcggagctggcgctcaagagcgcgcggctgcagggccacaccggttggttcctc
tacgagaagcaactggacgaggagcagagtagcaagggcacggtgcgctggcgtaccctg
atcggccggcgcatcgaggagcacggcatcgacttctacgtccagccggtgcagcaggag
cgggatcaggtggtattgcagcaggatctgctgatccggatccacgacgagcaggggcgg
gagctgcaggccggcgtcttcatgccgatggcggagaaggcggggctgttgctgccgctg
gatcggctggtggcggagcagaccctcggcctgctgcgccagcgctccgaacagagctgc
cccatcagcctgaccctttgtgcccagagcctgctgcaccgggagtttcagcgctggctg
ttcttcgatctgttccagctgccgcgcagcaccaacgagcgcttgatcctgcaactctcc
gaggctcaggtcacccgccactatgaggcgctcaagcggccgctgcgggcgctgcgcatg
ctgggctgccagctggccatcgatcacgccggccaggatgtggtgagcacccagtacatc
aaggagttcgagatcaatttcctcaagctgcaccccagcctggtgcgcgagatccatacc
cgccaggtcaatcagatggcggtgcgcagcctggtggggggctgtgccaacacccgcacc
cgagtcatcgctgtgggggtggagagcggcgacgagtggaagatgctgcgccacctcggg
gtgcacgccgggcagggcccctggttcgccgagccggaacggctggtactggagccggcc
ggcgcctga
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