Aeromonas hydrophila pc104A: V429_03395
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Entry
V429_03395 CDS
T03193
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ahp
Aeromonas hydrophila pc104A
Pathway
ahp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V429_03395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahp03019
]
V429_03395
Enzymes [BR:
ahp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V429_03395
Messenger RNA biogenesis [BR:
ahp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V429_03395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AHX67952
LinkDB
All DBs
Position
715299..716519
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AA seq
406 aa
AA seq
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MTFDELALAPALLATLPADLKCPTRVQQLAIPAALAGRDLLALARTGSGKTLAFGLPLLQ
RLDPASDRVQGLVLVPTRELAVQVSEALQGPAAGLGLRLVTLCGGVAQALQQAELALGPQ
LLVATPGRLRDLLAQQLLGLSQLRHLVLDEADRLLEMGFWPDIQWLLNAMPVERQTLLFS
ATLPAELDALATGLLTEPVRVEADPRNSVADDIEERLYLVNKSSKVPALISLLKAHEWPQ
VLVFISARDDADGVARKLAKAGIAVAALHGEKEQAVRERALGDFKAGKVRVLVATDLMAR
GIHVEALPLVINLDLPASAPVYVHRIGRTARAGRCGLAISLTCHGEADTLAAIRTLTGRE
LPLAELAGFPVTDQPASGEGKRAPRDKQANRRTQAKRSAKQFKGKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgatgaactagccctcgcccccgccctgctggcgaccctgcccgccgacctc
aagtgcccgacccgggtgcagcaactggccattcccgccgctctggcgggtcgggatctg
ctggcactggcccgcaccggcagcggcaagaccctggcgttcggcctgccgctgctgcag
cgcctcgatccggccagcgatcgggtgcaggggctggtgctggtgccgacccgcgagctg
gcggtgcaggtgagcgaggcgttgcaggggccagccgccgggctgggtctgcggctggtg
accctgtgcggcggggtggcgcaggcgctgcaacaggccgaactggcgctggggccgcaa
ctgctggtggcgaccccggggcgactgcgggatctgctagcccagcaactgctgggtctg
agccagctgcgccatctggtgctggacgaggcggaccggctgctggagatgggcttctgg
ccagacatccagtggttgctgaatgccatgccggtcgagcgtcagaccctgctgttctcg
gccaccctgccggccgagctggatgcgctggcgaccggtctgctgaccgagccggtgcgg
gtggaggcggatccccgcaacagcgtggccgacgatatcgaggagcggctctatctggtc
aacaagagcagcaaggtgccggcgctcatcagcctgctcaaggcccacgagtggccgcag
gtgctggtcttcatcagcgcgcgggacgatgccgacggggtggcccgcaagctggccaag
gcgggcatcgcggtggcggcgctgcacggcgagaaggagcaggcggtgcgtgagcgggcg
ctcggtgacttcaaggcgggcaaggtgcgagtgctggtagccaccgacctgatggcgcgc
ggcattcacgtggaggcgctgccgctggtgatcaacctggatctgcccgccagcgccccc
gtctacgtgcaccgcatcggccgtaccgcccgggccggacgctgcgggctcgccatctcg
ctcacctgccatggcgaggccgacaccctggcggcgatccgcaccctcaccggccgcgag
ctgccgctggcggagctcgccggtttcccggtcaccgatcagccagccagcggggagggc
aagcgcgccccccgtgacaagcaggccaatcgtcgcacccaggccaaacgcagcgccaaa
cagttcaagggcaagggctga
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