Aeromonas hydrophila pc104A: V429_12400
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Entry
V429_12400 CDS
T03193
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ahp
Aeromonas hydrophila pc104A
Brite
KEGG Orthology (KO) [BR:
ahp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ahp03016
]
V429_12400
Enzymes [BR:
ahp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
V429_12400
Transfer RNA biogenesis [BR:
ahp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
V429_12400
BRITE hierarchy
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DNA_pol_A_exoN
CCB2_CCB4
Motif
Other DBs
NCBI-ProteinID:
AHX69651
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All DBs
Position
complement(2667404..2668543)
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AA seq
379 aa
AA seq
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MALINAQAQMHYQLISQQAELDQYLASLADVPLAIDTEFVRTRTYYPQLGLFQIYDGEHL
ALLDPLTLDLSSLWQRLGRAGQIAILHASGEDLELIQHQAGHLPNQMHDTQLAAAFLGYG
VSVGFGALVNEFLAVELEKDQARTDWLARPLTPRQLEYAAADVFYLLPLYEKVMAKLHES
GKFAWFEQECQNHSARKTQTSDPRQAYLDIVNAWQLGRRELAILRELAAWRQQEAVRRDL
ALNFVVKELHLFKVAERRPTSLRDLNELGLAPIEIKIHGKRMLDIVAAAQQSDPDSWPEP
IRRLVDYPQYKAELKRIKGMVEEKAKASNIPPELVASKKIIHQYFTWSWRMSDEERARAD
KPMLLQGWRHELVGHLLAQ
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
ttggccctgatcaacgcgcaggcacagatgcactatcaactcatttcacagcaagccgaa
ctggatcagtatctcgcctccctggccgacgttcccctggccatcgatactgaattcgtt
cgcacccgcacctactatccccagctgggcctgttccagatctatgacggtgagcatctg
gcattgctggatccgctgacgctggatctctcctccctctggcaacggctcggccgggca
gggcagatcgccatcttgcacgcctccggtgaagatctggagcttatccagcatcaggca
ggccatctgcccaaccagatgcacgacacccagctggcagccgccttcctgggttacggg
gtatcggtcggttttggcgccctggtcaacgagtttctcgcggtggagctggaaaaggat
caggctcgcaccgactggctggcacgcccactgactccccgtcagctcgagtacgcagcg
gccgacgtgttttatctgctgccgctctatgagaaggtgatggccaagctgcatgaaagc
ggcaagtttgcctggttcgagcaggagtgccagaaccactccgcccgcaagacccagacc
agcgatccccgccaggcctatctcgatatcgtcaatgcctggcaactggggcgccgcgag
ctggctatcctgcgtgagctggccgcctggcgccagcaagaggcagtgcgccgggatctg
gccctcaacttcgtggtcaaagagctgcacctgttcaaggtggcggagcgcagacccacg
tccctgcgcgatctgaacgagctggggctggcccccatcgagatcaagatccacggcaaa
cggatgctggatatcgtggccgcggcccagcagagcgatcccgacagctggcccgagccc
attcgccggctggtggactacccccagtacaaggccgagctcaagcgcatcaaggggatg
gtggaagagaaggccaaggccagcaacattccgcccgagctggttgccagcaagaagatc
attcaccagtacttcacctggagctggcgcatgagcgacgaagagcgcgcccgggccgac
aaaccgatgctgctgcaaggctggcgccatgaactggttggccacttgctggcacagtaa
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