Aeromonas hydrophila pc104A: V429_22215
Help
Entry
V429_22215 CDS
T03193
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ahp
Aeromonas hydrophila pc104A
Pathway
ahp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ahp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
V429_22215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahp03021
]
V429_22215
03400 DNA repair and recombination proteins [BR:
ahp03400
]
V429_22215
Enzymes [BR:
ahp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V429_22215
Transcription machinery [BR:
ahp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V429_22215
DNA repair and recombination proteins [BR:
ahp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V429_22215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AHX71418
LinkDB
All DBs
Position
complement(4779794..4784098)
Genome browser
AA seq
1434 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDSIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIEPGMTNLERSQMLSEEQYLDALEEWGDEFDAKM
GAEAILALLRAIDLEGEVRTMREELDQTNSETKRKKTTKRLKLMEAFLQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLESRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRARINAKGEGMVLSGPKEAEKVYRAG
LADLHARVKVRITEYLRQEDGSLRAHTEMKNTTVGRAILSLILPKGMEYALIDEPKVLTA
AEQADLDANPQNWIKSVSNKALGKKLISRLLNTCYRKQGLKDTVIFADQLMYTGFHYAAL
SGASVGIDDMVIPDAKKDIIAAAEAEVAEIQDQFLSGLVTAGERYNKVIDIWASANERVS
KAMMENLSKERNVNSLGEEEEQASFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSI
IETPIVANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDMVITEDDC
GTTEGLWMTPLIEGGDVVEPLRERVLGRVVADDVIKPGTEDEVLVARNTLLDEQLCDLLE
RNSVDRVKVRSAITCETDFGNCAHCYGRDLARGHLVNKGEAVGVIAAQSIGEPGTQLTMR
TFHIGGAASRAAAESSIQVKNTGSIKLQNAKFVHNSDDKLVITSRSTELTIMDEMGRTKE
SHKLPYGSVLEVKDGQAVNAGETVANWDPHTHPIITEVAGRLHFEHMIDGVTITRQTDEL
TGLSSIVVLDVNERPSAGKEMRPTVKLVDLNGKDVMIPGTDVAAQYFLPGKAIVNLEDGA
NVGVGDAVARIPQESGGTKDITGGLPRVADLFEARQPKEPAILAEISGTISFGKETKGKR
RLVITPTDGGDVYEEMIPKWRNLNVFEGEKVEKGEVLADGPESAHDILRLRGISPVANYI
ANEVQDVYRLQGVKINDKHIEVIVRQMLRKCEILSAGDTDLIEGEQVEVARVKIANRKLV
AEGKTPATFRHILMGITKASLSTESFISAASFQETTRVLTEAAVGGKRDELRGLKENVIV
GRLIPAGTGFAYHHGRINQRAAAARAVGVPQVTADEAQQNLADLLNAAGSFDEE
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactcaagtttttgaaggctcagaccaagaccgaagagtttgacagtatc
aagatcggtctggcctctcctgacatgatccgctcctggtcattcggtgaggtcaaaaag
cctgagaccatcaactaccggactttcaagccggaacgtgatggtctgttctgcgcccgt
atcttcggaccggtgaaggactacgagtgtctgtgcggcaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgtagaagtgacccagaccaaggtccgtcgtgag
cgtatgggccacatcgagctggccagcccgactgcccacatctggttcctgaagtccctg
ccgtcccgtatcggtctgctgctggacatgaccctgcgtgacatcgagcgcgtgctgtat
ttcgaatcctatgtagtgatcgaacccggcatgaccaacctcgagcgcagccagatgctg
tccgaagagcagtacctggacgcactggaagagtggggcgacgaattcgacgccaagatg
ggtgccgaagcaatcctggcattgctgcgcgccatcgatctggaaggcgaagtgcgcacc
atgcgcgaagagctggatcagaccaactccgagaccaagcgcaagaagaccaccaagcgc
ctgaagctgatggaagccttcctgcagtccggcaacaagccggagtggatgatcatgaca
gtgctgcctgtgctgccgccggacctgcgtccgctggtaccgctggacggcggccgtttt
gcgacctccgatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgcttgaag
cgcctgctggacctggctgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcaa
gagtccgtcgatgccctgctggacaacggtcgtcgtggtcgtgccattaccggctccaac
aagcgcccgctgaaatccttggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctcggtaagcgtgtcgactactccggtcgttccgttatcaccgtaggtccgact
ctgcgtctgcatcagtgcggtctgccgaagaagatggctctggagctgttcaagcccttc
atctatggcaagctggaatcccgcggtctggcgaccaccatcaaggccgccaagaagatg
gtggagcgcgaagaagctgtcgtttgggacatcctggacgaagtgatccgcgaacacccg
gttctgctgaaccgtgcaccgaccctgcaccgtctgggtatccaggcgtttgaaccgacc
ctgatcgaaggcaaggccatccagctgcacccgctcgtctgtgccgcctataacgcggac
ttcgatggtgaccagatggcggtccacgtaccgctgaccctggaagcccagctggaagcg
cgcgcgctgatgatgtccaccaacaacatcctgtcgcctgcctccggtgagccgatcatc
gttccgtctcaggacgtggtcttgggtctgtactacatgacccgcgcccgtatcaacgcc
aagggcgaaggtatggtgctgtccggcccgaaagaagccgagaaggtataccgcgccggt
ctggccgatctgcatgctcgcgtgaaagttcgcatcaccgaatacctgcgtcaggaagac
ggttcgctgcgtgctcacaccgagatgaagaacaccaccgttggtcgtgcgatcctgagc
ctgatcctgccgaaaggcatggaatacgcgctgatcgacgagccgaaggtgctgactgct
gcagagcaggctgacctggatgccaacccgcagaactggatcaaatccgtatccaacaag
gcgctgggcaaaaagctcatctcccgtctgctgaacacctgctatcgcaagcagggcctg
aaggacaccgtcatcttcgctgaccagctgatgtataccggtttccactatgcggccctg
tccggtgcttccgttggtatcgatgacatggtcatcccggatgccaagaaagacatcatc
gccgctgcagaagccgaagttgccgagatccaggaccagttcctgtccggtctggtgacc
gcgggtgaacgctacaacaaggttatcgatatctgggccagcgccaacgagcgcgtctcc
aaggccatgatggagaacttgtccaaagagcgtaacgtcaactcgctgggtgaagaagaa
gagcaagcctcgttcaacagcatcttcatgatggccgactctggtgcgcggggttccgca
gcccagatccgtcagctggccggtatgcgtggcctgatggccaagccggatggctccatc
atcgagaccccgatcgtcgcgaacttccgcgaaggtctgaacgtactgcagtacttcatc
tccactcacggtgctcgtaagggtctggcggataccgcactgaagactgcgaactccggt
tacctgactcgtcgtctggttgacgtggcacaggacatggtgatcaccgaggacgattgc
ggcactaccgaaggtctgtggatgactccgctgatcgaaggtggcgacgtggtcgaaccg
ctgcgtgagcgcgtgctgggccgtgtggttgccgatgacgtgatcaagccgggtactgaa
gacgaagtgctggtagcacgtaacaccctgctcgacgagcagctgtgtgacctgctggag
cgcaactccgttgaccgcgtgaaggtacgttctgccatcacctgtgagaccgacttcggt
aactgtgctcactgctacggccgtgatctggcccgtggtcacctggttaacaagggtgag
gctgtcggtgttatcgccgcccagtccatcggtgaaccgggtacccagctgacgatgcgt
accttccacatcggtggtgccgcatcccgtgccgctgccgagagcagcatccaggtcaag
aacaccggtagcatcaagctgcagaacgccaagttcgttcacaacagtgacgacaaactg
gttatcacctcccgttctaccgaactgaccatcatggacgagatgggccgtaccaaggaa
agccacaagctgccttacggttccgtgctggaagtgaaggacggccaggccgtgaacgcc
ggtgaaaccgtcgccaactgggatccgcacactcacccgatcatcaccgaagtggcgggt
cgtctgcacttcgaacacatgatcgatggcgtgaccattactcgtcagaccgacgagctg
actggtctctcctccatcgtcgtgctggatgtcaacgagcgtccgagcgccggtaaagag
atgcgtccgaccgtgaaactggtcgacctgaacggcaaggacgtgatgatcccgggtacc
gatgtcgccgcccagtacttcctgccgggcaaggcaatcgtgaacctggaagatggtgcc
aacgtgggcgtgggtgacgcggtagcgcgtatcccgcaagagtccggcggtaccaaggac
atcaccggtggtctgccgcgcgttgcggatctgttcgaagcacgtcaaccgaaggaaccg
gcaattctggccgagatctccggtaccatctccttcgggaaagagaccaagggcaaacgc
cgtctggtcatcaccccgaccgatggtggcgatgtctacgaggagatgattccgaagtgg
cgtaacctgaacgtgttcgaaggtgaaaaagttgagaagggtgaagtgctggcggacggt
cctgagtctgctcacgatattctgcgtctgcgcggtatcagcccggtcgccaactacatc
gccaacgaagtgcaggacgtttaccgtctgcaaggcgttaagatcaacgacaagcacatc
gaagtcatcgtgcgtcagatgctgcgcaagtgcgagatcctgagcgctggcgacaccgac
ctgatcgaaggcgaacaggttgaagtggctcgcgtgaagattgccaaccgtaagctggtt
gctgagggcaagaccccggccaccttccgtcacatcctgatgggtattaccaaggcatct
ctgagcaccgagtccttcatctccgcggcttccttccaggaaaccacccgtgttctgacc
gaagcggccgttggcggcaagcgtgacgaactgcgtggcctgaaagagaacgtgatcgtg
ggtcgtctgatcccggctggtaccggcttcgcctaccaccacggccggatcaaccagcgt
gccgccgcagcccgtgctgttggtgtgccgcaggtgactgccgatgaagctcagcaaaac
ctggcggatctgctcaacgcagccggcagttttgacgaagagtaa
DBGET
integrated database retrieval system
