Aeromonas hydrophila subsp. hydrophila AL09-71: V428_11245
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Entry
V428_11245 CDS
T03192
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ahr
Aeromonas hydrophila subsp. hydrophila AL09-71
Pathway
ahr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V428_11245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahr03019
]
V428_11245
Enzymes [BR:
ahr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V428_11245
Messenger RNA biogenesis [BR:
ahr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V428_11245
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
AAA_22
PRAI
Motif
Other DBs
NCBI-ProteinID:
AHX32647
LinkDB
All DBs
Position
complement(2424710..2426095)
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AA seq
461 aa
AA seq
DB search
MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPML
QRLLANHGRGRRQVRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLDAI
KLGIDILVATPGRLLDLLTQGALTLSELEVLVLDEADRMLDMGFIVDIRRIMKALPAERQ
TLLFSATFSSEIKALADDLLKEPTLIEVDPSNTAAEQVTQRIIQVDRERRRELLSHMIGR
GNWQRVLVFVRTKQIADRLAQQMQKDGLDTVAIHGDKSQGARNRALADFREGKVRVLVAT
DIAARGLDIDQLPHVINFELPQMAEDYIHRIGRTGRAGRGGEAISLVSQDELGQLKGIEA
LIGQSLSVEILEGYEPSGKPSRQTLPGSKPVQNPPRARGAANAKGGNGKSAAGKNKAKSD
GGKKPAPARKREVVGEDIGFTPMRRLPKAQRDDYQDNSNEE
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcaacgaactgggtctgtctccgcacatcctgcgggccgtcaaggagctgggt
tacgaacagccaacccccatccagcaacaagccatccccgccattctggccggacaggat
gtgctcggcggcgcccagacaggcacaggcaaaacggccggtttcaccctgcccatgctg
cagcgcctgctggccaaccatggccgtggccgccgtcaggtgcgggccctggtgctgacc
ccgacccgcgaactggctgcccaggtgggtgagagcatcatcaaatatgcccaccacctg
ccgtttcgcaccctgatcgcctacggcggcgtcagcatcaagcccaatctggatgccatc
aagctcggcatcgacatcctggtggctaccccgggccgtctgctggatctgctgacccag
ggggcgctgaccctgtccgagctggaagtgctggtgctggacgaagcggatcgcatgctc
gacatgggcttcatcgtcgacattcgccgcatcatgaaggcgctgccggccgaacggcag
accctgctgttctccgccaccttctcaagcgagatcaaggcgctggcggatgacctgctc
aaagagcccaccctgatcgaggtggatcccagcaacaccgccgccgagcaggtgacccag
cgcatcatccaggtcgaccgggaacgtcgccgcgagctgctctcccacatgatcggccgt
ggcaactggcagcgggtgctggtgttcgtgcgcaccaagcagatcgccgatcgcctggcc
cagcagatgcaaaaagacgggctcgataccgtcgccatccacggcgacaagagccagggc
gcccgcaaccgggcgctggcggattttcgggaaggcaaggtgcgggtgctggtggcgacc
gacatcgccgcccgcggcctcgacatcgatcagctgccccacgtgatcaacttcgaactg
ccccagatggcggaggattacatccaccgcatcggccgcaccggccgcgccggccgtggc
ggcgaggccatctcgctggtgagccaggacgaactgggccagctcaagggcatagaggcg
ctgatcggccaatccctctcggtggagatcctggaagggtatgagcccagcggcaaaccg
agccggcagaccctgcctggcagcaagccggtacaaaatccgccgcgtgcccgtggcgcc
gccaatgccaagggtggcaacggcaaatccgccgcaggcaagaacaaggcgaagagcgat
ggcggcaagaagcctgccccagcccgcaagcgggaagtggtgggcgaggatatcggcttt
acccccatgcgccgcctgcccaaggcccagcgcgacgactatcaggacaactccaacgag
gagtaa
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