Aeromonas hydrophila subsp. hydrophila AL09-71: V428_16980
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Entry
V428_16980 CDS
T03192
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ahr
Aeromonas hydrophila subsp. hydrophila AL09-71
Brite
KEGG Orthology (KO) [BR:
ahr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahr03400
]
V428_16980
DNA repair and recombination proteins [BR:
ahr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
V428_16980
Archaeal homologous recombinant proteins
V428_16980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
nSTAND3
Jnk-SapK_ap_N
ABC_tran
ABC_ATPase
AAA_21
MMR_HSR1
Hormone_1
DUF87
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHX33685
LinkDB
All DBs
Position
complement(3716084..3719836)
Genome browser
AA seq
1250 aa
AA seq
DB search
MKILSLSGENLASLTGQFTIDFAGGALGAAGLFAITGNTGAGKSTLLDAICLALYDEMPR
FIANRKNVAEVGRMDDEEKLKANDVRGILSRGHASGFAEVQFRGCDGRIWLARWAVRRAR
NRAEGRFQAQERSLTDVVSGQVFSGSKRELQDRIDELVGLSWEQFRRAVILPQGEFAAFL
KSSADERSALLERMTGTELYSAISVQTHERAREEQQKLAAISQRLGDVALMDEATREQWV
SQQVSLATSLKHEQQQQQLMQDLRDLNGRIAAQLQACQEGEAALAAAEAAHAAAAPEREE
FARAEQAQVARADHDELARLTLEVQQQEKALAELGPELGKLEEQTQQSALTEQQLLAEKI
AAEREWGALQPELKRAQELDTRIREKQQQLQKIQQEGAQEREVQLTLEQGWRQQRQQVEQ
LKAQHLQWGAWLEEHKELAPVARQWQPLLTAMQDWAEDADRLQQLLTLREHKLRTLRQLQ
HQLEQGQQERDYWQREQERLQQQQHELQEQQWEGRLAKAQEQWQGQTEQLGQLRQLLELA
DYGRNHGEQHGRLQQEIGQLEQALGKLAILGDELTPARERLALQRDEARHALEQSRAIAS
FEQHRHILRDGEPCPLCGAEEHPYHQSQPQVAGILGQLAERVRSLELEWERLNHQYIQCE
SERQELARQLAVRQQHLPELETRAEQLTQRWQQLGGAELLGHPLPLRQSPIEWNELMSIL
LGRGQSLEQGLARSQQQLREAQLGQQQLQAVRQQLSQLASQHQQFEQQWQEADRQRIALE
GEVKAMGEQETTLRQRLEQGGSRLDEQMGGQPWRQWLGSQQWREWQRACEAWLHGQSEWE
RLTGEIASLTPALSAQEARLQTQRELLHKLERNYKEHEQQRQGLVTSRATCLGGEEIALV
ESRWQQRLQQLASELETMQGAARALRERQTELKTRLSHLEQEKQVSSRRRREVLGRWAAH
ASSLGIAEYDLRRLLAMSPDELKARRAALQALEDARAEARTRLTERQRALALEESKRDRY
REHHPELAALAPQELDSRLTALEAHCRTLDEQLFQCKSTLAQAEAAALKAGTLQEALAAQ
QAVADHWQRLCDLIGSASGAKLRTFAQSLTLERLLLEANAQLAELSPRYRLERVPGTDLA
LQVVDLDMGDEVRSVDSLSGGESFLVSLALALALSSLSSRQTQVESLFIDEGFGTLDPDS
LDLALSSLDSLQAAGRQIGVISHVQTLVERIGVQVRVEALGGGESRVVLP
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctctctttgagtggtgagaaccttgccagcctgaccggtcaattcaccatc
gattttgccggtggcgccctgggggccgccggcctgtttgccatcaccggcaataccggc
gccggcaagagcaccctgctcgatgccatctgtctggcgctctacgacgagatgccgcgc
tttatcgccaatcgcaagaatgtcgccgaagtgggccgcatggacgacgaggagaagctc
aaggccaacgacgtgcgcggcatcctcagccgcggccatgccagcggtttcgccgaggtg
cagtttcgcggttgtgacggccgcatctggctggcccgctgggcggtgcgccgggcccgc
aaccgcgccgaggggcgctttcaggcccaggagcgcagcctgaccgacgtggtgtcgggt
caggtgttcagtggcagcaagcgggagctgcaggatcgcatcgacgagctggtagggctc
tcctgggagcagtttcgccgcgccgtcatcctgccgcagggggagtttgccgccttcctc
aagtcgagcgccgacgagcgttcggccctgctcgaacggatgaccggcaccgagctttac
tccgccatttcggtccagacccatgagcgggcgcgggaggagcagcagaaactcgccgcc
atcagccagcggctcggcgacgtggcgctgatggacgaggcgacccgcgagcagtgggtg
agccagcaggtcagcctcgccaccagcctcaaacacgagcagcagcaacagcagctgatg
caggacttgcgcgatctcaacggccgcatcgccgcccagttgcaggcctgtcaggaggga
gaggcggcccttgccgcggccgaagcagcccacgctgcggccgctcccgagcgcgaggag
ttcgcccgcgccgagcaggctcaggtggcccgcgccgatcacgacgagctggctcgcctc
accctggaggtgcagcagcaggagaaggcgctggccgagcttggtcccgaacttggcaag
ctggaggagcagactcagcagagcgccctcaccgagcagcagctgctggcggagaagatc
gccgccgagcgcgagtggggcgccctgcagcccgagctcaaacgggcgcaggagctcgac
acccggattcgagaaaagcagcagcaactgcagaagatccagcaggagggggcgcaggag
cgggaggtgcagctcaccctggaacagggctggcgccagcagcgccagcaggtggagcag
ctcaaggcccagcacctgcagtggggcgcctggcttgaggagcacaaggagctggcgccg
gtggcccgccagtggcagcccctgctcaccgccatgcaggattgggccgaggatgccgac
aggctgcagcagttgctcaccctgcgcgaacacaagctgcgcaccctcaggcaactgcaa
caccagctggagcaggggcagcaggagcgcgactactggcagcgcgagcaggagcggctg
cagcagcaacagcacgagctgcaggagcagcagtgggaggggcgtctggccaaggcgcag
gagcagtggcaagggcagaccgagcagttgggccagctgcgccagctgctggagctggcg
gactatggccgcaatcacggtgagcagcatggtcgcctgcagcaggagatcggccagctg
gagcaggcgctcggcaagctggccatcctcggcgacgagctgacgccggcccgcgagcgg
ctcgccctgcaacgggacgaggcgcgccacgcgctggagcagtcccgcgccatcgccagt
ttcgagcagcatcgccacatcttgcgcgacggtgaaccttgcccgctctgcggcgccgag
gagcacccctatcaccagagccagccacaggtggcgggtattctggggcagctggcggaa
cgcgtccgcagcttggagctcgagtgggagcggctcaatcaccaatacattcagtgcgag
agcgagcgccaggagctggcccgccagctggcggtgcgtcagcaacatctgcctgagctg
gagacgcgcgccgagcagctgacccagcgctggcaacagctcggcggtgccgagctgctg
ggacatccgttgccgttacgtcagagcccgatcgagtggaacgaattgatgagcatcctg
ctgggccgcggccagagcctggagcaggggctggcccgcagccagcagcaactgcgcgag
gcccagctcggccagcagcagttgcaggccgtgcgccagcagctgagccagctggccagc
cagcaccagcagttcgagcagcagtggcaggaggccgaccgccagcgcatcgccctggaa
ggggaggtgaaggcgatgggcgagcaggaaacgaccctgcgccagcgccttgagcagggg
ggcagccggctcgacgagcagatggggggccagccctggcgtcagtggctgggcagccag
cagtggcgcgagtggcagcgggcctgcgaggcctggctgcacggtcagagcgagtgggag
cggctgaccggcgagattgccagcctcaccccggccctgagcgcccaggaggcgcgtctg
cagacccagcgcgagctgctgcacaagctcgagcgcaactacaaggagcatgaacagcaa
cggcaggggctggtcaccagccgcgccacctgtctggggggggaggagattgccctggtc
gagagccgctggcagcagcggctgcagcagctggccagcgagctggagacgatgcagggg
gcggcccgcgccctgcgcgagcgccagaccgagctcaagacccgcctcagccatctggag
caggagaagcaggtgagcagccggcggcggcgggaggtgctggggcgctgggctgcccac
gccagcagcctcggcatcgcagaatacgacctgcgtcgcctgctggccatgagcccggat
gagctcaaggcgcgccgcgccgccttgcaggcgctggaggatgcccgcgccgaggcacga
acccgcttgaccgagcggcagcgggcgctggcgttggaggagagcaagcgggatcgttac
cgcgagcatcaccccgagctggccgcgttggcgccacaggagctcgacagccggctgacg
gcgctggaggcgcactgccgcaccctcgacgagcagctgttccagtgcaagagcaccctg
gcccaggccgaggcggctgccctcaaggcgggcaccttgcaggaggcgctggccgcccag
caggcggtggcggatcactggcagcggctctgtgatctcatcggctcggccagcggcgcc
aagctgcgtaccttcgcccagagcctcacgttggagcggctgctgctggaggccaacgcc
cagctcgccgagctctccccccgctatcggctggagcgagtgcccggcaccgatctggcg
ctgcaggtggtggatctcgacatgggggacgaggtgcgctcggtggattccctctccggt
ggcgagagcttcctggtgtcgctggcgctggcgctggctctctccagcctgtcgtcgcgc
cagacccaggtcgaatcgctgtttatcgatgaaggcttcggcacgctcgatcccgacagc
ctggatctggcgctctcaagccttgactccctgcaggcggccggtcgccagatcggggtc
atctcccacgtgcagaccctggtggagcggatcggcgtgcaggtgcgggtggaggccctc
ggcggcggcgaaagccgggtggtactgccctga
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