Aeromonas hydrophila subsp. hydrophila AL09-71: V428_18300
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Entry
V428_18300 CDS
T03192
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ahr
Aeromonas hydrophila subsp. hydrophila AL09-71
Pathway
ahr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V428_18300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahr03019
]
V428_18300
03016 Transfer RNA biogenesis [BR:
ahr03016
]
V428_18300
Enzymes [BR:
ahr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
V428_18300
Messenger RNA biogenesis [BR:
ahr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V428_18300
Transfer RNA biogenesis [BR:
ahr03016
]
Prokaryotic type
tRNA degradation factors
V428_18300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
CsrA
KH_SLS1_2
OB_RRP5_4th
KH-I_KHDC4-BBP
LppA
Motif
Other DBs
NCBI-ProteinID:
AHX33921
LinkDB
All DBs
Position
complement(4006870..4009008)
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AA seq
712 aa
AA seq
DB search
MNPIVKSFQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTV
NYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVN
PAVSPDIVAMIGASAALAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLDLVVAG
TANAVLMVESEAAILSEEVMLGAVVFGHEQMQAVINAINEFAADVGTKPWNWTAPAVNEA
LKAKVAELATAELGEAYRITEKAVRYETIGAIKARVVEQVIASGVEEDAKKIGEEFHSLE
SRIVRGRVVRGEPRIDGRDPEMIRALSVATGVLPRAHGSALFTRGETQAMVVATLGTERD
AQNIDELTGNRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSADEF
PYVVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDI
LGDEDHLGDMDFKVAGTTEGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAI
QAPRAQISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRISAVA
NEAAMEAIRRIEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQN
VADHLTIGDVVKVKVLEVDRQGRVRLSIKEANAPTEAAAEPAVAAVEEPAAE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcctattgtaaagtcattccagtacggtcaacacaccgtcactctggaaaccgga
gtgatggcccgtcaagccactgcggccgtcatggtcagcatggacgatacctgcgtattt
gtgaccgtagttggcaagaaagaggccgatcacggccgtgatttcttcccgctgaccgtc
aactaccaggagcgtacctatgctgctggtcgtatcccgggtggtttcttccgtcgtgaa
ggccgtccgagcgaaggcgagaccctgatctcccgtctgatcgaccgtcctattcgtccg
ctgttcccggaaggcttcctcaatgaggttcaggtggttgccaccgtcatgtccgtgaac
ccggccgtttctcccgacatcgttgccatgatcggtgcctctgcggcgctggccatctcc
ggtatcccgttcggcggcccgatcggtgcagcccgcgtgggttacatgaacggtcagtac
gtgctgaacccgaccactaccgaactgccgcagagcgatctggacctggtagttgccggt
accgccaacgccgtgctgatggttgaatcagaagcggccatcctctccgaagaggtgatg
ctgggtgccgtggtgttcggtcacgagcagatgcaggctgttatcaacgccatcaacgaa
ttcgctgccgacgtcggcaccaagccgtggaactggactgctcctgccgtcaacgaagcg
ctgaaagccaaggttgccgagctggcaacagccgagctgggtgaagcctaccgcatcacc
gagaaagccgtgcgttacgaaaccatcggtgccatcaaggctcgtgtggttgagcaagtt
atcgcttccggcgtggaagaagatgccaagaagatcggcgaagagttccacagcctggaa
agccgcatcgtccgtggtcgcgtcgtccgtggcgagccgcgcatcgatggtcgcgatccg
gagatgatccgcgccctgtccgtcgccaccggcgtactgccgcgtgcccacggctccgcc
ctgtttacccgtggtgagactcaggccatggtcgttgccaccctgggtaccgagcgtgac
gcccagaacatcgacgagctgaccggcaaccgtgccgatcgcttcatgctgcactacaac
ttcccgccatactgcgtcggtgagaccggcatgatgggtagcccgaaacgtcgtgaaatc
ggtcacggccgtctggccaagcgcggcgttgctgccgtgatgccgagcgccgacgagttc
ccgtacgtggttcgcgtggtgtctgaaatcaccgaatccaacggctcctcctccatggcc
tccgtctgtggttcctccctggcgctgatggatgccggtgtgccgatcaaggcctccgtt
gccggtatcgccatgggtctggtgaaggaagaagaaggtttcgtcgtgctgtccgacatc
ctgggtgacgaagatcacctgggcgacatggacttcaaggttgccggtaccaccgaaggt
gtgaccgcactgcagatggacatcaagatcgaaggcatcaccaaagagatcatggagatt
gccctgaagcaagctcgtggtgctcgcctgcacatcctgaaagtgatggacgaagccatc
caggcaccgcgtgcccagatctccgatttcgccccgcgtatccacaccatcaagatcaat
cctgagaagatcaaggacgtgatcggcaagggtggttccgtgatccgtgccctgaccgaa
gagaccggcaccaacatcgagctggatgatgacggtactgtacgtatctccgccgtggcc
aacgaagctgccatggaagcgatccgtcgtatcgaggccatcaccgccgagatcgaagtg
aaccgcatctacgaaggcaaggttgtgcgtctggctgacttcggtgccttcgtcaacatc
ctgccgggcaaagatggtctggtgcacatctcccagatcaccgacgcgcgcgtgcaaaac
gtggctgaccacctgaccatcggtgacgtggtgaaggtgaaggtactggaagtggaccgt
cagggccgcgtgcgtctctccatcaaggaagcgaacgccccgaccgaagccgccgctgag
ccggctgttgctgccgtcgaagagccggctgccgaataa
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