Malaciobacter halophilus: AHALO_2388
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Entry
AHALO_2388 CDS
T05822
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ahs
Malaciobacter halophilus
Pathway
ahs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AHALO_2388 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahs03019
]
AHALO_2388 (rnr)
03016 Transfer RNA biogenesis [BR:
ahs03016
]
AHALO_2388 (rnr)
Enzymes [BR:
ahs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AHALO_2388 (rnr)
Messenger RNA biogenesis [BR:
ahs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AHALO_2388 (rnr)
Transfer RNA biogenesis [BR:
ahs03016
]
Prokaryotic type
tRNA degradation factors
AHALO_2388 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_2nd
CSD2
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
AXH10718
UniProt:
A0A2N1J5A8
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All DBs
Position
complement(2446361..2448214)
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AA seq
617 aa
AA seq
DB search
MYKELFKKIINSNDYFSKEEQKIIDKLIKESILFKKDDKFEINSKFKIGKLSFEKNYALL
EDISNEHKNIKLDFDYLNGAYDGDYVVAKRVFNPRSKIKAKVIEVFSSKAKELLVYVQNS
KFLTVKENIELDFKVKQKYEDGQILLINSKSFELIKDIGNINNPKVDEFISLYLYKELIR
LEKEIQIDAKMDDTNKRVDLTSLNFCTIDPASAKDHDDAIYYDEKNQILYVAIADVSYFV
KENSALDKQAYLKSTSVYLPSKVLPMLPKKLSEDMCSLRQDEKRYAYVFEIHLDANNLEI
KESKLYEAIIESKRKFSYGRIDRVLEGKLDKYTSLEKEIFDSLVKLYELTKSFRSKRLQK
GYEFRSTELRLKLNHNSELESIEQEYSTASHQLVEECMLFANIEASKKVNSVGIYRIHEE
PPFKAITKLVDDVNMLGVKVKLQSTVHETITHIQEKAKKTTLSKEIDELIIHSQTQAKYS
SKNLGHFGLGFDSYSHFTSPIRRYSDLVLHRMLKTKNTPNNIDDICDYISIQERKVDQLV
WDFEDRKYARFAKKHIGSEFKAYITDSERGLAKVYDKMAGMKVVLDNYKGQVIYSKLKVV
IKSADLITKTIIASIKY
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
ttgtataaagaactgtttaaaaagataattaattctaatgattattttagtaaagaagaa
caaaaaattatagataaacttattaaagagtctatcttatttaaaaaagatgataagttt
gagataaattctaaatttaaaataggaaagttatcttttgaaaaaaactacgctttatta
gaagatataagcaatgaacataaaaatattaaattagattttgattatttaaatggtgca
tatgatggtgattatgtagttgcaaaaagagtttttaatccaagaagtaaaataaaagca
aaagttatagaagtattttcttcaaaagcaaaagagcttttagtttatgtacaaaatagt
aagtttttaacagttaaagaaaatattgaattagattttaaagtaaaacaaaagtatgaa
gatggacaaatacttttaattaatagtaaaagttttgaattaataaaagatataggaaat
ataaataatccaaaagttgatgagtttatctctttgtatttatataaagagttaattaga
ttagaaaaagagatacaaatagatgccaaaatggatgatactaataaaagagttgattta
acttctttaaatttttgtacaatagacccagcaagtgcaaaagaccatgatgacgcaata
tattatgatgaaaaaaatcaaatactttatgttgcaattgcagatgtttcttattttgta
aaagagaattcagctttagataaacaagcatatttgaaatctacatctgtttatcttcct
tcaaaagttttacctatgcttcctaaaaaattaagtgaggatatgtgttctttaaggcaa
gatgaaaaaagatatgcgtatgtttttgaaatacatttagatgcaaataacttagaaatt
aaagaatcaaaattatatgaagcaataattgaatctaaaagaaaattttcatatggacga
attgatagggttttagaaggaaaattagataaatatacaagtttagaaaaagagatattt
gattcacttgtaaaactttatgagcttacaaaatcatttagaagtaaaagattgcaaaaa
ggttatgagtttaggtcaacagaattaagactgaaattaaatcataatagtgaacttgaa
tcaatagaacaagagtattcaactgcttctcatcaattagtagaagagtgtatgcttttt
gcaaatatagaagcaagtaaaaaagttaatagtgttggtatttatagaatacatgaagaa
ccaccttttaaagcaataacaaagcttgttgatgatgtaaatatgcttggggtaaaagta
aagttacaatcaactgttcatgaaacaataactcatatacaagaaaaagctaaaaaaact
actttatcaaaagagattgatgagttaataatacattctcaaacacaagcaaaatattca
tctaaaaatctaggtcactttggtttaggttttgattcatattctcactttacaagtcca
attagaagatattcagatttagttttacatagaatgttaaaaacaaaaaatactccaaat
aatatagatgatatttgtgattatatctctattcaagaaagaaaagttgaccaattagtt
tgggattttgaagatagaaaatatgcaagatttgcaaaaaaacatattggttcagagttt
aaagcttatataacagatagtgaaagaggtttagctaaagtatatgataaaatggctggt
atgaaagtagttttagataattataaaggtcaagttatttactcaaaactaaaagttgta
attaaatcagctgatttaattacaaaaactattattgcttcaattaagtattaa
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