Antarctobacter heliothermus: ANTHELSMS3_00670
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Entry
ANTHELSMS3_00670 CDS
T04983
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aht
Antarctobacter heliothermus
Pathway
aht03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aht00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ANTHELSMS3_00670 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aht03021
]
ANTHELSMS3_00670 (rpoC)
03400 DNA repair and recombination proteins [BR:
aht03400
]
ANTHELSMS3_00670 (rpoC)
Enzymes [BR:
aht01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ANTHELSMS3_00670 (rpoC)
Transcription machinery [BR:
aht03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ANTHELSMS3_00670 (rpoC)
DNA repair and recombination proteins [BR:
aht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ANTHELSMS3_00670 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
RnfC_N
PTS_EIIA_1
Motif
Other DBs
NCBI-ProteinID:
ASP19389
UniProt:
A0A222DZK9
LinkDB
All DBs
Position
complement(680849..685099)
Genome browser
AA seq
1416 aa
AA seq
DB search
MNQELTNNPFNPVAPVKTFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPCAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLAYGQMMNEEEFNDAQDQFGADAFS
ANIGAEAIREMLAAIDLEAEAENLRADLKEATGELKPKKIIKRLKVVESFLESGNRPEWM
IMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTIARDGMKGEGMVFSSPEEVEHAL
NAGEVHLHAKIKCRVKQIDEEGSEVWQLCESTPGRVRLGQLLPLNAKAPFELVNRLLRKG
DVQTVIDTVYRYCGQKESVIFCDQIMRLGFVEAFKAGISFGKDDMVIPDNKWELVDETRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTEAMMNTISARREDENGAEMEPNSVY
MMAHSKARGSVTQMKQLGAMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIIRMNDCGTDRAITAEAAINDGEVVATLGERILGRV
AADDLLHPETGELLVREGELIDERTADLVEDSGMQTARIRSPLTCEAEEGVCATCYGRDL
ARGTKVNTGEAVGIIAAQSIGEPGTQLTMRTFHMGGVAQGSSRSFLEASQNGKVVFANPG
TITNAAGELIVMNRNMQILIMSDQDEEIASHKMGYGSKLFVKEGDQVNRGDKLYEWDPYT
LPIIAEKDGIAKHVDLVNGLAVREETDDATGMTQKIVIDWRAAPKGNELKPEIILMDADG
EPLRNDQGNPIKYTMSVDAILSCEDGQEVKAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRISIEPADDSLEPKEYMIPKGKHIPVAEGDFIQ
KGDYIMDGNPAPHDILAIMGIEALANYMIDEVQDVYRLQGVKINDKHVEVIVRQMLQKWE
IQDSGDTTLLKGEHVDKMEFDEANAKAEKKGGRPAKGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDTLIGLKENVIVGRLIPAGTGGATQKVRKIAQDRDNVVIEARRE
EAEAAAALAAPVKLEEDVVGGDEFDTLIVDTPESRE
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgaccaacaacccgttcaaccccgttgctccggttaaaaccttcgac
gagatcaaggtctcgctggcctcccccgaacggatcctttcgtggtccttcggtgagatc
aagaagccggaaaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgc
gcgcgtatctttggcccgatcaaagattacgaatgcctctgcggcaaatacaagcgcatg
aaatatcgcggcgtcgtctgcgagaaatgcggcgtcgaagttacgcttcaaaaggtccgt
cgcgaacgcatgggccacatcgaactggccgcgccctgcgcccacatctggttcctcaag
tcgctgccgtcgcgcatcggtctgatgctggacatgacgctgcgcgatctggaacgcgtt
ctgtactttgaaaactacgttgtcatcgagccgggtctgaccgacctcgcctacggccag
atgatgaacgaagaagagttcaacgacgcgcaggaccagttcggcgcggacgcgttttcg
gccaatatcggtgccgaagcgatccgtgagatgctggctgccatcgaccttgaagccgaa
gcagaaaacctgcgcgcggacctcaaggaagcgaccggtgagctgaagcccaagaagatc
atcaagcgtctgaaggttgtggaatccttcctcgagtccggcaaccggcccgagtggatg
atcatgaccgtgatcccggtcatcccgcccgaactgcgcccgctggtgccgttggatggt
ggccgctttgcgacctctgacctgaacgacctgtatcgccgcgtgatcaaccggaacaac
cgcctcaagcggctgatcgaactgcgcgcgcctgacatcatcgtccgcaacgaaaagcgg
atgctgcaggaatccgttgacgccctgttcgacaacggtcggcgcgggcgcgtcatcacg
ggtgccaacaagcgtccgctgaaatcgctgtccgacatgctgaagggcaaacagggccgc
ttccgtcagaaccttttgggtaagcgcgtcgacttctccggtcgttcggtcattgtgacc
ggcccggaactgaagctgcaccagtgcggtctgcccaagaagatggcgctcgaactgttc
aagccgttcatctattcgcggctggaggccaagggcctttccagcaccgtgaagcaggcg
aaaaagctggtcgagaaagagcgccccgaagtctgggacatcctggatgaggtcatccgt
gagcacccggtcctgctaaaccgcgcgcccacgctgcaccgtctgggcattcaggcgttt
gagccgatcctgatcgaaggcaaggcgatccagctgcacccgctggtctgctcggctttc
aacgctgactttgacggcgaccaaatggccgtgcacgtcccgctgagccttgaggcccag
ttggaagcgcgtgtcctgatgatgtcgacgaacaacgttctgtcgcctgccaacggcgca
ccgatcattgttccctcgcaggatatgatccttggtctgtactatgtgaccatcgcgcgg
gacggcatgaaaggtgaaggcatggtcttttcctcgcccgaagaggttgagcacgcgctc
aacgcgggcgaagtgcacctgcatgccaagatcaaatgccgcgtcaagcaaatcgacgag
gaaggcagcgaagtctggcagctgtgtgaatcgacacccggccgcgtgcggcttggtcag
cttttgccgttgaatgcaaaggcgccgtttgaactggtcaaccgcctgctgcgtaagggc
gacgtgcagaccgtcatcgacacggtctaccgctattgcggtcagaaagagtcggtcatc
ttctgcgaccagatcatgcgtcttgggtttgtcgaagcgttcaaggcgggcatttcgttc
ggcaaagacgacatggtcattcccgataacaagtgggaactggtcgatgagacgcgcgat
caggtgaaggactttgaacagcagtacatggacggcctgatcactcagggcgaaaagtac
aacaaagtcgtcgatgcctggtcgaagtgtaacgacaaggtcaccgaggcgatgatgaac
accatctccgcccgtcgtgaggacgagaatggtgccgaaatggagccgaactcggtctac
atgatggcccactccaaggcccgtggctcggtcacccagatgaagcagctgggtgccatg
cgcggcctgatggccaagccgaacggcgacatcatcgaaacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgagtacttcaactcgactcacggcgcccgtaagggtctg
tcggacaccgctctgaagacggcgaactcgggctatctgacccgtcgtctggtggacgtc
gcgcaggactgcatcattcgcatgaatgattgcggcactgatcgcgcgatcaccgctgag
gcggcgatcaatgacggtgaagtggtcgccacattgggcgagcgcattctgggtcgtgtt
gcggccgatgatctgctccaccccgagaccggcgagcttctggtgcgcgaaggcgagctg
atcgacgaacgcactgccgatctggtcgaggactcgggcatgcagacggcgcgtattcgc
tcgccgctgacctgtgaggccgaagagggcgtttgcgccacctgctacgggcgtgacctt
gcccgcggcaccaaggtgaacaccggcgaggccgtcggcatcatcgcggcgcagtcgatc
ggtgaaccgggtacacagctgaccatgcggacattccacatgggtggcgttgcacagggt
tcgtcgcggtccttccttgaggccagccagaacggtaaagtcgtcttcgcgaacccgggc
acgatcaccaacgccgcaggcgaattgatcgtgatgaaccggaacatgcagatcctcatc
atgagcgatcaggacgaagagatcgcatcccacaagatgggctacggctccaaactgttc
gttaaagagggcgatcaggttaatcgtggcgacaagctgtacgaatgggacccttacacc
ctgccgatcatcgccgagaaggatggtatcgccaaacatgtggaccttgtgaacggtctt
gccgtgcgtgaggaaaccgatgatgccacgggcatgacccagaagatcgtgatcgactgg
cgtgccgcacccaaaggcaatgagctcaagccggaaatcatcctgatggatgccgatggt
gaaccgctgcgcaacgatcagggcaacccgatcaaatacaccatgtcggtggatgcgatc
ctgtcctgtgaagacggccaagaggtcaaggccggcgacgttgtggcgcgtatcccgcgt
gagggtgccaagaccaaggacatcaccggtggtctgccgcgtgtggccgaactctttgag
gcacgtcgccccaaggaccacgccatcatcgcggaaatcgacggttatgtgcggttcggc
aaagactacaaaaacaagcgccggatcagcatcgagccggcggacgacagccttgagccc
aaggaatacatgatccccaagggcaagcacatcccggtcgccgaaggtgatttcatccag
aagggtgattacatcatggacggtaacccggccccccacgatattcttgcgatcatgggg
atcgaggcgctggccaactacatgatcgacgaagtgcaggacgtttatcgactgcagggc
gtgaagatcaacgacaagcacgtcgaggtcatcgttcgtcagatgctgcagaagtgggag
atccaggactctggcgataccacgctgctgaagggcgagcacgtcgacaagatggagttt
gacgaggccaacgccaaggccgagaaaaagggtggccgtcctgccaagggcgaaccgatc
ctgctgggcatcaccaaggcgtcgttgcagacgcggtcgttcatctctgccgcctccttc
caggagacgactcgggtgctgactgaggcttcggtacagggcaagaaggacacgctgatc
ggtctcaaagagaacgtgattgtgggccgtctgatcccggcgggcaccggtggcgcgacg
cagaaggtgcgcaagatcgcacaggatcgcgacaacgtcgtgatcgaagcacgccgcgaa
gaggccgaggcggccgctgcgctggccgctccggtcaagctggaagaagatgttgtcggt
ggggacgagtttgacactctgatcgtcgacacgccggagagccgcgaataa
DBGET
integrated database retrieval system
