Azospirillum humicireducens: A6A40_01810
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Entry
A6A40_01810 CDS
T04409
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ahu
Azospirillum humicireducens
Pathway
ahu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ahu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A6A40_01810 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahu03021
]
A6A40_01810 (rpoC)
03400 DNA repair and recombination proteins [BR:
ahu03400
]
A6A40_01810 (rpoC)
Enzymes [BR:
ahu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A6A40_01810 (rpoC)
Transcription machinery [BR:
ahu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A6A40_01810 (rpoC)
DNA repair and recombination proteins [BR:
ahu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A6A40_01810 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ANC90735
UniProt:
A0A160JDF4
LinkDB
All DBs
Position
403856..408028
Genome browser
AA seq
1390 aa
AA seq
DB search
MNELMNIFGQVQGPQSFDQIRIQIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLKDLERILYFENYVVIEPGLTPLKLHSLLSEEEYMNAQDEYGEDAFTAS
IGAEALRIMLSALDLDEEKKRCREDLRDTNSEAKRKKLVKRLKLIDAFLASQSRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELKAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYAKLELYGLASTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGIYYISMDRPSEKGEGMVFANVSEIEQALNA
KVLSIHAKIKARYVGVDDEGNELISIVETTPGRMLLSELLPRHPKVPFSLINRVLTKKDV
GNVIDAVYRHCGQKETVIFADRLMKLGFGHACRAGISFGKDDMVIPVAKEKLVNESKERV
KEFEQQYLDGLITQGEKYNKVVDVWSECTEKVASEMMKAISTTEAGKPVNSVYMMAHSGA
RGSAAQIRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDAIIVEHDCGTERGITVKAVIDGGEVISPLGDRILGRTVVGDVID
PLNGELIVEDGGLIDEPTVDRIERSGIDSVKIRSVLTCETRDGVCAKCYGRDLARGTLVN
TGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSQIEAAFDATVRINNRNVVMNSS
GIPVVMGRSTEVILLDEQGRERARHRVPYGAKLLADEGVKVERGAKLAEWDPYTLPIITE
RAGTARYIDLVEGISMREVMDEATGISSKVVVDWRQQPRGADLKPRIALVDERGDLITLP
NGLEARYFMSVDAILSVENGAEVRAGDVLARIPRESSKTRDITGGLPRVAELFEARRPKD
FAIISEMSGRVEFGKDYKTKRRIVVRNDETGDEKEYLIPKGKHISVQEGDYVERGDLLMD
GNPVPHDILAVMGVEALADYLINEIQDVYRLQGVKINDKHIEVIVRQMLQKVEITDAGET
TFLVGEQVDRQEFDEENEKTVAEGLQPAHGHPVLQGITKASLQTRSFISAASFQETTRVL
TEAAVGGKVDNLEGLKENVIVGRLIPAGTGSVVNRLKLIAAERDREAALEAGAPEETPAL
PTPGEESSAA
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagttgatgaacattttcggccaggtccaggggccgcagagcttcgatcagatc
cgcatccagatcgcgagccccgagcggatccggtcctggtcctacggcgagatcaagaag
ccggaaaccatcaactaccgcaccttcaagccggagcgcgacggcctgttctgcgcccgc
atcttcggcccgatcaaggattacgagtgcttgtgcggcaagtacaagcgcatgaagtat
cgcggcatcatctgcgagaagtgcggcgtcgaggtcacgctgtcgaaggtccggcgcgag
cgcatgggccatatcgaactggcgtccccggtcgcgcacatctggttcctgaagtcgctg
ccgagccgcatcggcctgctgctcgacatgacgctcaaggatctggagcgcatcctctat
ttcgaaaactacgtcgtcatcgagcccggcctcaccccgctcaagctgcattcgctgctg
agcgaggaagagtacatgaacgcccaggacgagtatggcgaggacgccttcaccgcgtcg
atcggtgccgaagcgctgcgcatcatgctgtcggcgctcgacctcgacgaggagaagaag
cgctgccgtgaggatctgcgcgacaccaactccgaagccaagcgcaagaagctggtcaag
cgcctgaagctgatcgacgccttccttgcctcgcagtcgcgccccgagtggatgatcctg
gaagtcattccggtgatcccgcccgagctgcgtccgctggtcccgctcgacggcggccgt
ttcgcgacgtccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgtctg
aagcggctgatcgagctgaaggcgccggacatcatcgtccgcaacgagaagcgcatgctg
caggaggccgtcgacgctctgttcgacaacggccgccgtggccgcgtcatcaccggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgattactcgggccgttcggtcatcgtcgtcggtccg
gagctgaagctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaagccc
ttcatctacgccaagctggagctgtatggcctcgcctccaccatcaaggccgccaagcgg
atggtggaaaaggagcgtcccgaggtgtgggacatcctggaagaggtcatccgcgagcat
ccggtgatgctgaaccgtgcgccgacgctgcaccgtctcggcatccaggcgttcgagccg
acgctgatcgaaggcaaggcgattcagctgcacccgctggtctgcaccgccttcaacgcc
gacttcgacggcgaccagatggccgtgcacgtcccgctgagcctcgaggcccagctggaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctgtcgcccgccaatggcaagccgatc
atcgtgccgtcgcaggatatcgtgctcggcatctattacatctccatggaccgcccgagc
gagaagggcgagggcatggtgttcgccaacgtctcggagatcgagcaggcgctgaacgcc
aaggtcctgtcgatccatgcgaagatcaaggcgcgctacgtcggcgtggacgacgagggc
aacgagctgatcagcatcgtcgagacgacgccgggccgcatgctgctgtcggagctgctg
ccgcgtcacccgaaggtgccgttctcgctgatcaaccgcgtcctgaccaagaaggacgtc
ggcaacgtcatcgacgccgtctaccgccactgcggccagaaggagacggtgatcttcgcc
gatcgcctgatgaagctgggcttcggtcacgcctgccgcgccggcatttccttcggcaag
gacgacatggtcatccccgtcgccaaggagaagctggtcaacgagtcgaaggagcgggtg
aaggagttcgagcagcagtatctcgacggtctgatcacccagggcgagaagtacaacaag
gtcgtcgacgtctggtcggaatgcaccgaaaaggtcgcctccgagatgatgaaggcgatc
tcgaccaccgaagccggcaagccggtgaactcggtgtacatgatggcccactccggtgcg
cgcggttccgccgcgcagatccgtcagctggccggcatgcgcggcctgatggccaagccg
tcgggcgagatcatcgagacgcccatcatctcgaacttcaaggaaggcctgaccgtgctg
gagtacttcaactccacccacggcgcccgcaagggtctggccgacaccgccttgaagacg
gcgaactccggttacctgacccgccgtctggtcgacgtggcgcaggacgccatcatcgtc
gagcatgattgcggcaccgagcgcggcatcaccgtcaaggcggtgatcgacggcggcgaa
gtcatcagcccgctgggcgaccgcatcctcggccgtaccgtggtcggcgacgtgatcgac
ccgctgaacggcgagctgatcgtcgaggacggcggcctgatcgacgagccgacggtcgac
cgtatcgagcggtctggcatcgactcggtgaagatccgttcggtcctgacctgcgagacc
cgcgacggcgtctgcgccaagtgctacggccgtgacctggcccgcggcacgctggtgaac
accggcgaggcggtcggcgtcatcgcggcgcagtcgatcggcgagcccggcacccagctg
acgatgcgtaccttccacatcggcggtgcggcgcagcgcggtgcggagcagagccagatc
gaggcggcgttcgatgcgacggtgcggatcaacaaccgcaacgtcgtcatgaactcgtcc
ggcatcccggtcgtcatggggcgcagcaccgaagtgatcctgctcgacgagcagggccgc
gagcgggcccgtcaccgtgtgccgtacggtgccaagctgctggccgacgagggcgtgaag
gtcgagcgcggcgcgaagctggccgaatgggatccctacaccctgccgatcatcaccgaa
cgcgccggtaccgcccgctacatcgacctcgtggaaggcatctccatgcgcgaggtgatg
gacgaggcgaccggcatcagctccaaggtggtggtcgactggcgccagcagccgcgcggt
gccgatctgaagccgcgcatcgcgctggtggatgagcggggcgacctgatcaccctgccg
aacggcctggaagcccgttacttcatgtcggtggacgccatcctgtcggtggagaacggt
gccgaggtccgggccggcgacgtgctggcgcgtatcccccgcgagtcgtccaagacccgt
gacatcaccggcggtctgccgcgcgtggccgagctgttcgaggcgcgtcgtccgaaggac
ttcgcgatcatctcggagatgagcggccgcgtcgaattcggtaaggactacaagaccaag
cgccgcatcgtcgtccgcaatgacgagaccggtgacgagaaggagtatctgatcccgaag
ggcaagcacatctccgtgcaggagggtgactatgtcgaacgcggcgatctgctgatggac
ggcaacccggtgccgcacgacatcctggcggtgatgggtgtggaggccttggccgactac
ctgatcaacgagatccaggacgtctatcgactgcagggcgtgaagatcaacgacaagcac
atcgaggtgatcgttcgccagatgctgcagaaggtcgagatcaccgacgccggcgagacc
accttcctggtgggcgagcaggtcgaccgtcaggagttcgacgaggagaacgagaagacc
gtggcggaaggcctccagcccgcccacggtcatccggttctccagggcatcaccaaggcc
agcctgcagacgcggtccttcatctcggccgcgtcgttccaggaaaccacccgcgtcctc
acggaagcggccgtcggcggcaaggtcgacaatctggaaggcctgaaggagaacgtcatc
gtcggtcgcctgatcccggccggcacgggctccgtggtgaaccgcctgaagctgatcgcc
gccgagcgcgaccgcgaggccgccctggaagccggcgctccggaggaaactccggccctg
ccgaccccgggcgaggaaagctccgcggcctga
DBGET
integrated database retrieval system
