Azonexus hydrophilus: AADV58_10510
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Entry
AADV58_10510 CDS
T10592
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ahv Azonexus hydrophilus
Pathway
ahv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ahv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AADV58_10510 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahv03400
]
AADV58_10510 (mfd)
Enzymes [BR:
ahv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AADV58_10510 (mfd)
DNA repair and recombination proteins [BR:
ahv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AADV58_10510 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
HemY_N
Motif
Other DBs
NCBI-ProteinID:
WZJ20387
LinkDB
All DBs
Position
2174081..2177554
Genome browser
AA seq
1157 aa
AA seq
DB search
MSVTPLLLSLPALPKAGQRIDLPAHAGSADALTLAELAASNPQRTFAVVTASAADAQRLL
EEIPWFAPQLKVRLLPDWETLPYDHFSPHQDLVSERLATLWAALQGEVQILLVPAATAVN
RLAPPEFMAAYTFAFRKGQTLDAEKFRAQVTLAGYANVTQVVSPGEYSIRGGLIDLFPMG
SQLPYRLDLFDDEVESIKTFDVDTQRTVYPVPEVRLLPAREFPLDDKGRTHFRQAFRERF
EGDPAKSGIYKDISTGIASAGIEYYLPLFFDATATLFDYLPKDAVFVTHGDAPAAIAAFW
NDTRSRYNLLQGDKARPLLAPEELFLTDEAFFTAAKSYGRLALGKTGDRPQFCESENRGL
SPVLLPNVAVDRRSDDPLGALKNHLASYPGRVLLLAETAGRRETLAAMFAEHGLKPAACA
DFAAFAGGKETLALTVSPLQQGFALDQVAFISETELFAGSPRRTRREAARKASFDNWLKD
LTELKVGDPVVHESHGIGRYRGLVRMDLGLGEQEFLELHYANDAKLFVPVAQLHVISRYS
GAEPDAAPLHTLGSGQWEKAKRKAAEQARDTAAELLALYAARAARQGHAFDFSENDYEAF
ADGFGFEETADQAQAIAAVIADMKSGKPMDRLVCGDVGFGKTEVALRAAFCAVAGGKQVA
VLCPTTLLCEQHYQTFVDRFADWPVKVAEISRFKTAKETAQALQDLAEGKIDIIIGTHKL
IGKDVKFNRLGLVIIDEEHRFGVRQKETLKAMRAEVDVLTLTATPIPRTLALSMEGLRDF
SVIATAPQKRLAIKTFVSRFSDGIIREAVLRELKRGGQVYFLHNEVDTIENMREKLEKLV
PEARIVIGHGQMNERELERVMRDFTGQRANLLLCTTIIETGIDNPHANTILINRSEKFGL
AQLHQLRGRVGRSHHQAYAYLLVQDEKAMTKQAKMRLEAIQAMEELGSGFFLAMHDLEIR
GAGEVLGDNQSGEMQEVGFTMFSEMLNRAVAHLKQGKVLETADLTQPIGVSGEINLRTPA
LLPDAYCPDVHERLTLYKRLANCEADDEIDTLQEELVDRFGELPLQAQALVATHRLRLLV
KPLLVQKLDAGNDQVTIQFAPEFSKNPPIEPIKIINLIQKNRSYKLAGQDKISLLRHCPA
LQDKVAAVKDMIRELTK
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtcaccccgctcctgttgtccctccccgccctgcccaaggccggccagcgcatc
gacctgccggctcatgccggttccgccgatgccctgacactggctgaactggcggccagc
aacccgcaacggactttcgccgtggtcaccgccagcgccgccgacgcgcagcgcctgttg
gaagaaatcccgtggttcgcgccgcagctcaaggtgcgcctgctaccggactgggaaacc
ctgccctacgaccatttctcgccacaccaggacctcgtttccgaacgcctggcgacgctg
tgggccgcattgcagggcgaggtgcagatcctgctggtgccggcggcgaccgcggtcaac
cggctggcgccgccggagttcatggccgcctacacgtttgcattcaggaagggccagacg
ctcgacgccgagaagttccgcgcccaggtgacactggccggctacgccaacgtcacccag
gttgtctcgcccggtgaatactcgatccgtggcgggctgatcgaccttttcccgatgggc
tcgcaactgccctaccggctcgacctgttcgacgacgaggtcgagagcatcaagaccttc
gacgtcgacacccagcgtaccgtctacccggtgccggaagtgcgcctgctgccggcgcgc
gagttcccgttggacgataaaggccgcacccacttccgccaggccttccgcgagcgtttc
gagggcgacccggccaagtccggcatctacaaggacatttcgaccggcatcgccagcgcc
ggcatcgagtattacctgccgttgttcttcgacgcgacggcgacgctgttcgactacctg
cccaaggacgcggtcttcgtcacccacggcgacgcgccggccgccatcgctgccttctgg
aacgacacccgctcgcgctacaacctgctgcagggcgacaaggcgcggccactgctcgcg
ccggaagaactgttcctgaccgacgaagcctttttcacggcggccaaatcttacggtcga
ctggcgctgggtaaaaccggggacagaccacaattttgcgaatctgaaaatcgtggtctg
tccccggttttactgcccaacgtcgccgtcgatcggcgcagcgacgatccgctgggcgcc
ttgaagaaccatctcgccagctatcccggacgcgtgctgctgcttgccgagaccgccggc
cggcgcgagacgctggctgcgatgtttgccgaacacggcctcaagcccgctgcctgcgcc
gactttgccgccttcgccggcggcaaggaaacgttggcgctgaccgtcagcccgctgcag
cagggctttgccctcgaccaggtcgccttcatcagcgaaaccgagctgttcgccggcagc
ccgcgccgcactcggcgcgaagcggcgcgcaaggcgagcttcgacaactggctgaaggac
ctcaccgaactcaaggtcggcgacccggtggtgcacgaaagccacggcatcggccgctat
cgcggtctggtacggatggacctcggcctcggcgagcaggaattcctcgagctgcactac
gccaacgacgccaagctcttcgtgccggtggcgcaactgcacgtgatctcgcgttattcc
ggcgccgaaccggacgccgcgccgctgcatacgctcggttccggccaatgggaaaaggcc
aagcgcaaggccgccgagcaggcgcgcgacaccgccgccgaactgcttgcgctgtacgcc
gcgcgcgccgcccgtcagggccacgccttcgatttttcggaaaacgactacgaggctttc
gccgacggcttcggtttcgaggaaaccgccgaccaagcgcaggccatcgccgccgtcatc
gccgacatgaagtcgggcaagccgatggaccggctggtctgcggcgacgtcggcttcggc
aaaaccgaggtcgccctgcgcgccgccttttgcgcggtggccggcggcaagcaggtggcc
gtgctttgcccgaccaccttgctctgcgaacagcattaccagaccttcgtcgaccgcttt
gccgactggccggtcaaggttgctgaaatctcccgcttcaagaccgccaaggaaaccgcg
caggcgctgcaggacctagccgagggcaagatcgacatcatcatcggcacccacaagctg
atcggcaaggacgtgaaattcaatcgcctgggcctggtcatcatcgacgaggaacaccgt
ttcggcgtgcgtcagaaggagacgctgaaggcgatgcgcgccgaggtcgatgtgctgacg
ctgacggcgacgccgatcccgcgcacgctggcgctgtcgatggaaggcctgcgcgacttc
tcggtaatcgccacggcgccgcagaagcgcctggcgatcaagaccttcgtcagccgcttt
tccgacggcatcatccgcgaagcggtgctgcgcgaattgaagcgcggcggccaggtgtac
ttcctgcacaacgaggtcgacaccatcgagaacatgcgcgagaagctggaaaagctggtg
ccggaagcgcgcatcgtcatcggccacggccagatgaacgagcgcgaactggaacgggtc
atgcgcgatttcaccggccagcgcgccaacctgctcttgtgcacgacgatcatcgagacc
ggcatcgacaatccgcacgccaataccatcctgatcaaccgttccgagaaattcggcctc
gcccagctccaccagctgcgcggccgcgtcggccgttcgcaccaccaggcctacgcctac
ctgctcgtccaggacgagaaggcgatgaccaagcaggccaagatgcgcctggaggccatc
caggccatggaggaactcggttccggcttcttcctggccatgcacgatctcgaaatccgc
ggtgccggcgaggtgctcggcgacaaccagtcgggcgaaatgcaggaagtcggcttcacg
atgttcagcgagatgctcaaccgcgccgtcgcccacctgaaacagggcaaggtgctggaa
accgccgacctgacgcagccgatcggcgtcagcggcgaaatcaacctgcgcaccccggcg
ctgctgcccgacgcctactgccccgacgtgcacgagcggctgacgctgtacaagcgcctg
gccaactgcgaagctgacgacgagatcgacacgctgcaggaagaactggtcgaccgcttc
ggcgaattgccgctgcaagcgcaggcgctggtcgccacgcaccggctgcgcctcttggtc
aagccgctgctggtgcagaagctcgacgccggcaacgaccaggtgacaatccagttcgcg
ccggaattctcgaagaatccgcctatcgaaccgatcaagatcatcaatttgatccagaag
aaccgcagctataagctggcgggacaggataaaatctcccttttgcgccactgcccggcc
ttgcaggacaaggttgcggcggtgaaagacatgatacgcgagctgaccaaatga
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